C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SH3-domain binding protein 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000118545 Sh3bp2-003 ENSMUSG00000054520 10090 + 5:34549576-34563625 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartLiverLungOvaryPlacentaENSMUST00000118545
Transcript ID Adipose Adrenal Brain Breast Colon Heart Liver Lung Ovary Placenta
ENSMUST00000118545 0.904±0.00 1.031±0.10 6.529±0.75 2.662±0.31 1.547±0.51 0.328±0.00 0.600±0.15 0.893±0.00 2.693±0.52 0.458±0.18

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003SI CIL_0003SI_0002 CGP 5:34496087-34563638
CIL_00074C CIL_00074C_0002 CGP 5:34525838-34632308

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0017124 IPI SH3 domain binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000356331 SH3BP2-007 protein_coding Homo_sapiens 0 1642
ENST00000435136 SH3BP2-002 protein_coding Homo_sapiens 0 1642
ENST00000442312 SH3BP2-201 protein_coding Homo_sapiens 0 1642
ENST00000452765 SH3BP2-001 protein_coding Homo_sapiens 0 1642
ENST00000503393 SH3BP2-202 protein_coding Homo_sapiens 0 1779
ENST00000510204 SH3BP2-008 retained_intron Homo_sapiens 0 791
ENST00000511747 SH3BP2-006 protein_coding Homo_sapiens 0 1779
ENST00000513069 SH3BP2-025 nonsense_mediated_decay Homo_sapiens 0 396
ENST00000515737 SH3BP2-003 nonsense_mediated_decay Homo_sapiens 0 1343
ENST00000515802 SH3BP2-009 retained_intron Homo_sapiens 0 1127

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