C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SH3-domain binding protein 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000054520 Sh3bp2 10090 + 5:34525838-34563638 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000067638 Sh3bp2-001 34525846-34563625 protein_coding
  ENSMUST00000101316 Sh3bp2-002 34543365-34563625 protein_coding
  ENSMUST00000118545 Sh3bp2-003 34549576-34563625 protein_coding
  ENSMUST00000125817 Sh3bp2-004 34525838-34551700 protein_coding
  ENSMUST00000138912 Sh3bp2-005 34543365-34552746 nonsense_mediated_decay
  ENSMUST00000153750 Sh3bp2-006 34543365-34557721 retained_intron
  ENSMUST00000179943 Sh3bp2-201 34549688-34563638 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000067638ENSMUST00000101316ENSMUST00000118545ENSMUST00000179943
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000067638 3.430±0.41 6.906±1.07 2.305±0.52 0.752±0.00 8.084±3.26 2.850±0.58 0.993±0.34 2.903±0.51 5.683±3.37 4.512±0.28 1.327±0.23 5.688±1.24 1.228±0.76 1.338±0.34
ENSMUST00000101316 0.725±0.11 N/A 0.637±0.00 N/A 2.273±0.87 1.164±0.22 0.148±0.00 0.831±0.34 1.383±0.27 1.303±0.12 0.309±0.00 1.085±0.06 0.582±0.23 0.377±0.04
ENSMUST00000118545 0.904±0.00 1.031±0.10 N/A 6.529±0.75 2.662±0.31 1.547±0.51 0.328±0.00 N/A 0.600±0.15 0.893±0.00 N/A 2.693±0.52 0.458±0.18 N/A
ENSMUST00000179943 0.946±0.00 N/A 0.568±0.00 5.464±0.28 1.930±0.00 N/A N/A N/A 1.190±0.00 0.806±0.00 0.703±0.00 2.260±0.00 1.081±0.63 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003SI CIL_0003SI_0002 CGP 5:34496087-34563638
CIL_00074C CIL_00074C_0002 CGP 5:34525838-34632308

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0017124 IPI SH3 domain binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000021982 sh3bp2 SH3-domain binding protein 2 protein_coding Danio_rerio
ENSG00000087266 SH3BP2 SH3-domain binding protein 2 protein_coding Homo_sapiens

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