C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: heat shock protein 9, pseudogene 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000119602 Hspa9-ps1-001 ENSMUSG00000081729 10090 - X:60576946-60578878 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastHeartKidneyLiverPlacentaENSMUST00000119602
Transcript ID Brain Breast Heart Kidney Liver Placenta
ENSMUST00000119602 0.012±0.00 0.048±0.00 0.017±0.00 0.022±0.00 0.037±0.00 0.053±0.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000PN CIL_0000PN_0003 CGP X:60055956-60592698
CIL_0001AP CIL_0001AP_0002 CGP X:60223290-60592698
CIL_0008B4 CIL_0008B4_0002 VISTA X:60243404-60845489
CIL_0008R8 CIL_0008R8_0002 VISTA X:60419307-61020575
CIL_0001AO CIL_0001AO_0002 CGP X:60436052-60893430
CIL_0008YR CIL_0008YR_0002 VISTA X:60443793-61045062

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000297185 HSPA9-001 protein_coding Homo_sapiens 0 1969
ENST00000432228 HSPA9P1-001 processed_pseudogene Homo_sapiens 0 1714
ENST00000504810 HSPA9-010 protein_coding Homo_sapiens 0 375
ENST00000504902 HSPA9-008 nonsense_mediated_decay Homo_sapiens 0 815
ENST00000505110 HSPA9-004 nonsense_mediated_decay Homo_sapiens 0 407
ENST00000506477 HSPA9-005 retained_intron Homo_sapiens 0 272
ENST00000507097 HSPA9-002 retained_intron Homo_sapiens 0 1537
ENST00000507115 HSPA9-003 nonsense_mediated_decay Homo_sapiens 0 449
ENST00000507886 HSPA9-011 protein_coding Homo_sapiens 0 243
ENST00000508003 HSPA9-006 retained_intron Homo_sapiens 0 488
ENST00000512328 HSPA9-007 nonsense_mediated_decay Homo_sapiens 0 355
ENST00000523929 HSPA9-013 nonsense_mediated_decay Homo_sapiens 0 315
ENST00000524109 HSPA9-014 retained_intron Homo_sapiens 9e-34 148

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