C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000PN_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000022895-ENSDARG00000036442 CGP 7955 14:33312031-33500892
GeneTranscriptPositionBiotype
ENSDARG00000022895 (mcf2a)
MCF.2 cell line derived transforming sequence a 		ENSDART00000034883 (mcf2a-001) 33312031-33372996 protein_coding
ENSDART00000148830 (mcf2a-002) 33352254-33356636 protein_coding
ENSDARG00000036442 (atp11c)
ATPase, Class VI, type 11C 		ENSDART00000052938 (atp11c-201) 33382642-33500892 protein_coding

Danio rerio Ensembl (Zv9)

Genome
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Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
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CIL_0000PN_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000101977-ENSG00000101974 CGP 9606 X:139581770-139945276
GeneTranscriptPositionBiotype
ENSG00000101974 (ATP11C)
ATPase, class VI, type 11C 		ENST00000327569 (ATP11C-008) 139726349-139832288 protein_coding
ENST00000361648 (ATP11C-009) 139726349-139832288 protein_coding
ENST00000370557 (ATP11C-001) 139726346-139933070 protein_coding
ENST00000422228 (ATP11C-003) 139782557-139789430 protein_coding
ENST00000433868 (ATP11C-004) 139726349-139745791 protein_coding
ENST00000450801 (ATP11C-002) 139726353-139750053 protein_coding
ENST00000460773 (ATP11C-007) 139728786-139797281 processed_transcript
ENST00000471746 (ATP11C-006) 139750091-139782633 processed_transcript
ENST00000485626 (ATP11C-005) 139802302-139945276 processed_transcript
ENSG00000101977 (MCF2)
MCF.2 cell line derived transforming sequence 		ENST00000338585 (MCF2-004) 139582471-139642518 protein_coding
ENST00000370573 (MCF2-003) 139582443-139642518 protein_coding
ENST00000370576 (MCF2-002) 139581771-139642728 protein_coding
ENST00000414978 (MCF2-201) 139581771-139708216 protein_coding
ENST00000437564 (MCF2-006) 139581771-139605779 protein_coding
ENST00000446225 (MCF2-005) 139582142-139615052 protein_coding
ENST00000483690 (MCF2-007) 139607184-139614950 processed_transcript
ENST00000519895 (MCF2-008) 139582297-139708227 protein_coding
ENST00000520602 (MCF2-001) 139581770-139692156 protein_coding
ENST00000536274 (MCF2-202) 139581771-139642841 protein_coding
ENSG00000216114 (AL033403.1)
 ENST00000401295 (AL033403.1-201) 139599216-139599303 miRNA
ENSG00000252719 (SNORA18)
Small nucleolar RNA SNORA18 		ENST00000516910 (SNORA18.1-207) 139909904-139910034 snoRNA
CIL_0000PN_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000031139-ENSMUSG00000062949 CGP 10090 X:60055956-60592698
GeneTranscriptPositionBiotype
ENSMUSG00000031139 (Mcf2)
mcf.2 transforming sequence 		ENSMUST00000033478 (Mcf2-002) 60055959-60147643 protein_coding
ENSMUST00000063507 (Mcf2-001) 60055956-60179089 protein_coding
ENSMUST00000101531 (Mcf2-003) 60055956-60147700 protein_coding
ENSMUSG00000062949 (Atp11c)
ATPase, class VI, type 11C 		ENSMUST00000033480 (Atp11c-201) 60223293-60403981 protein_coding
ENSMUST00000101527 (Atp11c-202) 60223293-60403981 protein_coding
ENSMUST00000133295 (Atp11c-002) 60225623-60266830 processed_transcript
ENSMUST00000138569 (Atp11c-003) 60235461-60592698 processed_transcript
ENSMUST00000154051 (Atp11c-001) 60223290-60592698 protein_coding
ENSMUSG00000067835 (Gm14661)
predicted gene 14661 		ENSMUST00000152669 (Gm14661-001) 60557728-60807993 antisense
ENSMUSG00000079583 (Gm7073)
predicted gene 7073 		ENSMUST00000114687 (Gm7073-201) 60436052-60452477 protein_coding
ENSMUST00000166562 (Gm7073-202) 60436052-60539249 protein_coding
ENSMUST00000190178 (Gm7073-001) 60436052-60456195 protein_coding
ENSMUSG00000081729 (Hspa9-ps1)
heat shock protein 9, pseudogene 1 		ENSMUST00000119602 (Hspa9-ps1-001) 60576946-60578878 processed_pseudogene
ENSMUSG00000082226 (Gm715)
predicted gene 715 		ENSMUST00000117865 (Gm715-001) 60548019-60548849 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000PN_0001ENSDARG00000022895ENSDART00000034883ENSDART00000148830ENSDARG00000036442ENSDART00000052938CIL_0000PN_0002ENSG00000101974ENST00000327569ENST00000361648ENST00000370557ENST00000422228ENST00000433868ENST00000450801ENST00000460773ENST00000471746ENST00000485626ENSG00000101977ENST00000338585ENST00000370573ENST00000370576ENST00000414978ENST00000437564ENST00000446225ENST00000483690ENST00000519895ENST00000520602ENST00000536274ENSG00000216114ENST00000401295ENSG00000252719ENST00000516910CIL_0000PN_0003ENSMUSG00000031139ENSMUST00000033478ENSMUST00000063507ENSMUST00000101531ENSMUSG00000062949ENSMUST00000033480ENSMUST00000101527ENSMUST00000133295ENSMUST00000138569ENSMUST00000154051ENSMUSG00000067835ENSMUST00000152669ENSMUSG00000079583ENSMUST00000114687ENSMUST00000166562ENSMUST00000190178ENSMUSG00000081729ENSMUST00000119602ENSMUSG00000082226ENSMUST00000117865
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000PN_0001ENSDARG00000022895ENSDART00000034883ENSDARG00000036442ENSDART00000052938CIL_0000PN_0002ENSG00000101974ENST00000327569ENST00000361648ENST00000370557ENST00000422228ENST00000433868ENST00000450801ENST00000460773ENST00000471746ENSG00000101977ENST00000338585ENST00000370573ENST00000370576ENST00000414978ENST00000437564ENST00000446225ENST00000483690ENST00000519895ENST00000520602ENSG00000216114ENST00000401295ENSG00000252719ENST00000516910CIL_0000PN_0003ENSMUSG00000031139ENSMUST00000033478ENSMUST00000063507ENSMUST00000101531ENSMUSG00000062949ENSMUST00000033480ENSMUST00000101527ENSMUST00000133295ENSMUST00000154051ENSMUSG00000067835ENSMUST00000152669ENSMUSG00000079583ENSMUST00000114687ENSMUST00000166562ENSMUSG00000081729ENSMUST00000119602ENSMUSG00000082226ENSMUST00000117865
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000022895 ENSDART00000034883 N/A N/A N/A 3.356±2.82 N/A N/A 0.131±0.09 N/A N/A N/A 0.351±0.00 N/A N/A N/A
ENSDART00000148830 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000036442 ENSDART00000052938 N/A N/A N/A 5.255±0.00 N/A N/A 2.229±0.67 2.122±0.00 1.931±0.00 N/A 1.790±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000101974 ENST00000327569 1.557±0.00 N/A N/A N/A 1.172±0.00 1.039±0.00 N/A 1.722±0.61 0.847±0.24 N/A N/A 0.704±0.15 0.335±0.00 2.003±0.33
ENST00000361648 N/A N/A N/A N/A 0.701±0.00 N/A N/A N/A N/A N/A N/A 0.600±0.49 0.351±0.00 N/A
ENST00000370557 1.820±0.00 N/A N/A 0.230±0.11 1.265±0.28 1.005±0.12 0.295±0.19 0.835±0.00 0.577±0.00 1.257±0.57 0.563±0.00 0.624±0.30 0.274±0.00 1.060±0.06
ENST00000422228 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.564±0.00 N/A N/A N/A
ENST00000433868 1.667±0.00 2.256±0.00 N/A 0.400±0.00 1.116±0.00 1.299±0.00 0.566±0.00 3.051±0.00 1.137±0.00 1.512±0.00 N/A 1.661±0.21 0.672±0.00 1.658±0.00
ENST00000450801 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.492±0.26 0.360±0.00 N/A
ENST00000460773 N/A N/A N/A 0.248±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.698±0.00
ENST00000471746 N/A N/A N/A N/A N/A N/A 0.571±0.00 N/A N/A N/A N/A N/A 0.841±0.00 N/A
ENST00000485626 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000101977 ENST00000338585 N/A N/A N/A N/A N/A N/A 0.039±0.00 N/A N/A N/A N/A 0.227±0.06 N/A 2.117±0.00
ENST00000370573 0.023±0.00 N/A N/A N/A N/A N/A N/A 0.043±0.00 N/A N/A N/A N/A N/A N/A
ENST00000370576 N/A N/A N/A 0.470±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000414978 N/A 0.022±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000437564 N/A 0.117±0.00 N/A 1.669±0.00 0.069±0.00 0.079±0.00 0.042±0.00 0.433±0.00 0.017±0.00 N/A N/A 0.481±0.32 0.034±0.00 3.506±0.94
ENST00000446225 N/A N/A N/A 0.941±0.23 N/A N/A N/A N/A 0.071±0.00 0.034±0.00 N/A N/A N/A 9.982±0.00
ENST00000483690 N/A 0.066±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000519895 N/A N/A 0.317±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.018±0.00
ENST00000520602 N/A 0.023±0.00 N/A N/A N/A N/A 0.009±0.00 0.044±0.00 N/A N/A N/A N/A N/A 0.542±0.00
ENST00000536274 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000216114 ENST00000401295 N/A 0.541±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000252719 ENST00000516910 N/A N/A N/A N/A N/A N/A N/A N/A 0.310±0.00 N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000031139 ENSMUST00000033478 N/A 0.073±0.00 0.003±0.00 0.048±0.00 N/A 0.042±0.00 N/A 0.013±0.00 0.019±0.01 N/A N/A 0.184±0.10 N/A 0.330±0.00
ENSMUST00000063507 0.089±0.00 N/A N/A N/A N/A 0.041±0.00 0.009±0.00 0.013±0.00 0.014±0.00 0.013±0.00 0.005±0.00 0.250±0.10 N/A 0.530±0.34
ENSMUST00000101531 N/A N/A 0.001±0.00 0.477±0.35 N/A N/A N/A 0.002±0.00 0.000±0.00 N/A N/A N/A 0.007±0.00 N/A
ENSMUSG00000062949 ENSMUST00000033480 N/A 1.338±0.51 N/A 0.978±0.00 1.716±0.38 N/A 0.197±0.01 0.297±0.00 3.716±4.47 5.769±0.00 0.213±0.08 1.192±0.61 0.565±0.29 N/A
ENSMUST00000101527 1.757±0.83 1.657±0.17 1.800±0.01 3.339±1.93 1.999±1.03 1.351±0.00 0.766±0.23 1.160±0.50 8.413±7.82 2.433±1.53 0.296±0.08 1.889±1.23 0.694±0.25 0.600±0.46
ENSMUST00000133295 2.199±0.34 N/A N/A N/A 5.089±1.69 3.993±0.00 1.255±0.16 1.621±0.00 23.760±6.29 3.289±0.53 N/A 3.377±1.35 N/A 1.218±0.25
ENSMUST00000138569 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000154051 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.353±0.00 N/A N/A
ENSMUSG00000067835 ENSMUST00000152669 N/A N/A N/A 0.011±0.00 N/A N/A N/A N/A 0.009±0.00 N/A N/A 0.033±0.01 0.157±0.09 0.018±0.00
ENSMUSG00000079583 ENSMUST00000114687 N/A N/A N/A N/A N/A N/A 0.010±0.00 N/A N/A N/A N/A 0.006±0.00 N/A 0.854±0.00
ENSMUST00000166562 N/A N/A N/A N/A N/A N/A 0.012±0.00 N/A N/A N/A N/A 0.009±0.00 N/A 5.208±0.00
ENSMUST00000190178 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000081729 ENSMUST00000119602 N/A N/A N/A 0.012±0.00 0.048±0.00 N/A 0.017±0.00 0.022±0.00 0.037±0.00 N/A N/A N/A 0.053±0.04 N/A
ENSMUSG00000082226 ENSMUST00000117865 0.376±0.15 0.357±0.08 0.372±0.05 2.302±0.47 0.560±0.14 0.086±0.07 0.120±0.06 0.112±0.08 0.021±0.00 0.145±0.04 0.116±0.05 0.432±0.19 0.236±0.13 0.728±0.23

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