C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0008R8_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs667 VISTA 9606 X:139949968-140551211
GeneTranscriptPositionBiotype
ENSG00000134595 (SOX3)
SRY (sex determining region Y)-box 3 		ENST00000370536 (SOX3-001) 140502987-140505503 protein_coding
ENSG00000203933 (CXorf66)
chromosome X open reading frame 66 		ENST00000370540 (CXorf66-001) 139955725-139965520 protein_coding
ENSG00000214653 (HNRNPA3P3)
heterogeneous nuclear ribonucleoprotein A3 pseudogene 3 		ENST00000416838 (HNRNPA3P3-001) 140032344-140033480 processed_pseudogene
ENSG00000224942 (RP11-51C14.1)
 ENST00000420490 (RP11-51C14.1-001) 140397062-140398311 processed_pseudogene
ENSG00000225758 (RPS17P17)
ribosomal protein S17 pseudogene 17 		ENST00000419392 (RPS17P17-001) 140470866-140471274 processed_pseudogene
ENSG00000230707 (RP11-364B14.3)
 ENST00000453380 (RP11-364B14.3-001) 140091743-140092561 processed_pseudogene
ENSG00000231110 (AC004070.1)
 ENST00000458577 (AC004070.1-001) 140216035-140216804 lincRNA
ENSG00000233145 (RP11-364B14.1)
 ENST00000417426 (RP11-364B14.1-001) 140017268-140018037 lincRNA
ENSG00000241248 (RN7SL727P)
RNA, 7SL, cytoplasmic 727, pseudogene 		ENST00000482164 (RN7SL727P-201) 140085855-140086150 misc_RNA
ENSG00000263377 (AL121875.1)
 ENST00000584172 (AL121875.1-201) 140404099-140404190 miRNA
CIL_0008R8_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs667 VISTA 10090 X:60419307-61020575
GeneTranscriptPositionBiotype
ENSMUSG00000045179 (Sox3)
SRY (sex determining region Y)-box 3 		ENSMUST00000135107 (Sox3-001) 60891366-60893430 protein_coding
ENSMUSG00000062949 (Atp11c)
ATPase, class VI, type 11C 		ENSMUST00000033480 (Atp11c-201) 60223293-60403981 protein_coding
ENSMUST00000101527 (Atp11c-202) 60223293-60403981 protein_coding
ENSMUST00000133295 (Atp11c-002) 60225623-60266830 processed_transcript
ENSMUST00000138569 (Atp11c-003) 60235461-60592698 processed_transcript
ENSMUST00000154051 (Atp11c-001) 60223290-60592698 protein_coding
ENSMUSG00000067835 (Gm14661)
predicted gene 14661 		ENSMUST00000152669 (Gm14661-001) 60557728-60807993 antisense
ENSMUSG00000079583 (Gm7073)
predicted gene 7073 		ENSMUST00000114687 (Gm7073-201) 60436052-60452477 protein_coding
ENSMUST00000166562 (Gm7073-202) 60436052-60539249 protein_coding
ENSMUST00000190178 (Gm7073-001) 60436052-60456195 protein_coding
ENSMUSG00000081323 (Rpl7l1-ps1)
ribosomal protein L7-like 1, pseudogene 1 		ENSMUST00000118822 (Rpl7l1-ps1-001) 60971990-60972714 processed_pseudogene
ENSMUSG00000081729 (Hspa9-ps1)
heat shock protein 9, pseudogene 1 		ENSMUST00000119602 (Hspa9-ps1-001) 60576946-60578878 processed_pseudogene
ENSMUSG00000081891 (Gm14660)
predicted gene 14660 		ENSMUST00000119809 (Gm14660-001) 60818208-60818782 processed_pseudogene
ENSMUSG00000082226 (Gm715)
predicted gene 715 		ENSMUST00000117865 (Gm715-001) 60548019-60548849 processed_pseudogene
ENSMUSG00000083463 (Gm4909)
predicted gene 4909 		ENSMUST00000118749 (Gm4909-001) 60706270-60707063 processed_pseudogene
ENSMUSG00000084331 (Gm8163)
predicted gene 8163 		ENSMUST00000122020 (Gm8163-001) 60726389-60727448 processed_pseudogene
ENSMUSG00000086562 (Gm14651)
predicted gene 14651 		ENSMUST00000147192 (Gm14651-001) 60614810-60615251 processed_pseudogene
ENSMUSG00000087565 (Gm14662)
predicted gene 14662 		ENSMUST00000145552 (Gm14662-001) 60893653-60898067 antisense

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008R8_0001ENSG00000134595ENST00000370536ENSG00000203933ENST00000370540ENSG00000214653ENST00000416838ENSG00000224942ENST00000420490ENSG00000225758ENST00000419392ENSG00000230707ENST00000453380ENSG00000231110ENST00000458577ENSG00000233145ENST00000417426ENSG00000241248ENST00000482164ENSG00000263377ENST00000584172CIL_0008R8_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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008R8_0001ENSG00000134595ENST00000370536ENSG00000203933ENST00000370540ENSG00000214653ENST00000416838ENSG00000224942ENST00000420490ENSG00000225758ENST00000419392ENSG00000230707ENST00000453380ENSG00000231110ENST00000458577ENSG00000233145ENST00000417426ENSG00000241248ENST00000482164ENSG00000263377ENST00000584172CIL_0008R8_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
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000134595 ENST00000370536 N/A 0.013±0.00 N/A 0.181±0.16 N/A N/A 0.026±0.00 N/A N/A N/A N/A 0.766±0.71 N/A 1.829±0.22
ENSG00000203933 ENST00000370540 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.078±2.75
ENSG00000214653 ENST00000416838 0.149±0.00 0.076±0.00 N/A 0.078±0.00 0.042±0.00 0.078±0.00 N/A 0.054±0.00 0.020±0.00 N/A 0.020±0.00 0.040±0.03 0.102±0.00 0.141±0.01
ENSG00000224942 ENST00000420490 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.050±0.00
ENSG00000225758 ENST00000419392 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.034±0.00
ENSG00000230707 ENST00000453380 0.034±0.00 0.113±0.00 N/A 1.569±0.00 N/A N/A N/A N/A N/A N/A N/A 0.331±0.14 N/A 1.261±0.22
ENSG00000231110 ENST00000458577 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.772±0.20
ENSG00000233145 ENST00000417426 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.949±0.09
ENSG00000241248 ENST00000482164 N/A N/A N/A N/A N/A N/A N/A 0.246±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000263377 ENST00000584172 N/A N/A N/A 0.181±0.00 N/A N/A N/A N/A 0.183±0.00 N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000045179 ENSMUST00000135107 0.017±0.00 0.028±0.01 N/A 8.989±6.88 0.014±0.00 0.030±0.01 0.023±0.00 0.013±0.00 0.009±0.01 N/A N/A 6.950±2.53 0.761±0.45 0.991±0.46
ENSMUSG00000062949 ENSMUST00000033480 N/A 1.338±0.51 N/A 0.978±0.00 1.716±0.38 N/A 0.197±0.01 0.297±0.00 3.716±4.47 5.769±0.00 0.213±0.08 1.192±0.61 0.565±0.29 N/A
ENSMUST00000101527 1.757±0.83 1.657±0.17 1.800±0.01 3.339±1.93 1.999±1.03 1.351±0.00 0.766±0.23 1.160±0.50 8.413±7.82 2.433±1.53 0.296±0.08 1.889±1.23 0.694±0.25 0.600±0.46
ENSMUST00000133295 2.199±0.34 N/A N/A N/A 5.089±1.69 3.993±0.00 1.255±0.16 1.621±0.00 23.760±6.29 3.289±0.53 N/A 3.377±1.35 N/A 1.218±0.25
ENSMUST00000138569 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000154051 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.353±0.00 N/A N/A
ENSMUSG00000067835 ENSMUST00000152669 N/A N/A N/A 0.011±0.00 N/A N/A N/A N/A 0.009±0.00 N/A N/A 0.033±0.01 0.157±0.09 0.018±0.00
ENSMUSG00000079583 ENSMUST00000114687 N/A N/A N/A N/A N/A N/A 0.010±0.00 N/A N/A N/A N/A 0.006±0.00 N/A 0.854±0.00
ENSMUST00000166562 N/A N/A N/A N/A N/A N/A 0.012±0.00 N/A N/A N/A N/A 0.009±0.00 N/A 5.208±0.00
ENSMUST00000190178 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000081323 ENSMUST00000118822 N/A N/A N/A 0.045±0.00 N/A N/A N/A N/A N/A N/A N/A 0.890±0.00 N/A N/A
ENSMUSG00000081729 ENSMUST00000119602 N/A N/A N/A 0.012±0.00 0.048±0.00 N/A 0.017±0.00 0.022±0.00 0.037±0.00 N/A N/A N/A 0.053±0.04 N/A
ENSMUSG00000081891 ENSMUST00000119809 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.022±0.00 N/A
ENSMUSG00000082226 ENSMUST00000117865 0.376±0.15 0.357±0.08 0.372±0.05 2.302±0.47 0.560±0.14 0.086±0.07 0.120±0.06 0.112±0.08 0.021±0.00 0.145±0.04 0.116±0.05 0.432±0.19 0.236±0.13 0.728±0.23
ENSMUSG00000083463 ENSMUST00000118749 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.029±0.00 N/A
ENSMUSG00000084331 ENSMUST00000122020 N/A N/A N/A N/A N/A N/A N/A N/A 0.006±0.00 0.037±0.00 N/A 0.038±0.01 0.005±0.00 N/A
ENSMUSG00000086562 ENSMUST00000147192 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.111±0.00
ENSMUSG00000087565 ENSMUST00000145552 0.060±0.00 0.128±0.00 0.014±0.00 0.519±0.00 N/A N/A N/A N/A 0.054±0.00 N/A N/A 0.365±0.20 0.009±0.00 0.235±0.04

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