C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cyclin-dependent kinase 9 (CDC2-related kinase)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000120105 Cdk9-002 ENSMUSG00000009555 10090 - 2:32707444-32712267 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000120105
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000120105 29.446±4.72 31.496±8.22 34.978±0.00 27.801±10.32 19.725±4.19 7.792±3.43 19.325±4.12 11.671±5.67 25.868±7.73 2.380±0.07 38.651±14.59 30.878±12.67 13.140±5.88

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008YA CIL_0008YA_0002 VISTA 2:32608279-33209524
CIL_0000H9 CIL_0000H9_0002 CGP 2:32682609-32713076

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 ISO DNA binding
GO:0003682 IDA chromatin binding
GO:0004693 IEA cyclin-dependent protein serine/threonine kinase activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005634 IDA nucleus
GO:0005737 IEA cytoplasm
GO:0006281 IEA DNA repair
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006468 ISO protein phosphorylation
GO:0008023 ISS transcription elongation factor complex
GO:0008024 IDA:ISS positive transcription elongation factor complex b
GO:0008353 IEA RNA polymerase II carboxy-terminal domain kinase activity
GO:0017069 IDA snRNA binding
GO:0044212 IDA transcription regulatory region DNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000373264 CDK9-001 protein_coding Homo_sapiens 0 1304
ENST00000491521 CDK9-003 processed_transcript Homo_sapiens 0 651
ENST00000498339 CDK9-004 processed_transcript Homo_sapiens 0 435

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