C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted pseudogene 6136
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000120149 Gm6136-001 ENSMUSG00000084106 10090 - 1:86908793-86909683 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000120149
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000120149 11.532±2.44 3.814±1.33 52.198±2.29 12.775±9.04 7.490±2.49 3.949±0.91 2.845±0.51 4.702±1.05 13.806±26.26 4.696±0.55 0.182±0.09 13.457±9.14 0.356±0.23 1.524±0.19

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007FN CIL_0007FN_0002 CGP 1:86666291-87050095
CIL_0007FQ CIL_0007FQ_0002 CGP 1:86703808-87089928

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000202773 RPL6-001 protein_coding Homo_sapiens 0 795
ENST00000424576 RPL6-002 protein_coding Homo_sapiens 0 795
ENST00000456481 AC009245.3-001 processed_pseudogene Homo_sapiens 0 787
ENST00000466377 RP11-408P14.1-001 processed_pseudogene Homo_sapiens 0 771
ENST00000489915 RPL6P27-001 transcribed_processed_pseudogene Homo_sapiens 0 789
ENST00000546368 RPL6-006 retained_intron Homo_sapiens 0 209
ENST00000549847 RPL6-008 protein_coding Homo_sapiens 0 394
ENST00000550238 RPL6-011 protein_coding Homo_sapiens 0 305
ENST00000550566 RPL6-017 protein_coding Homo_sapiens 0 396
ENST00000551041 RPL6-003 retained_intron Homo_sapiens 7e-35 152
ENST00000552455 RPL6-015 retained_intron Homo_sapiens 0 396
ENST00000583065 RPL6P27-002 processed_transcript Homo_sapiens 0 647

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