C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 12587
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000120180 Gm12587-001 ENSMUSG00000082947 10090 - 11:121886542-121886968 processed_pseudogene

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainLiverPlacentaTestisENSMUST00000120180
Transcript ID Bladder Brain Liver Placenta Testis
ENSMUST00000120180 0.030±0.00 0.028±0.00 0.046±0.00 0.101±0.05 1.947±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000137451 hmgb2a-004 protein_coding Danio_rerio 1e-33 147
ENSDART00000047159 hmgb2a-001 protein_coding Danio_rerio 1e-33 147
ENSDART00000142811 hmgb2a-003 protein_coding Danio_rerio 5e-32 141
ENSDART00000114903 galnt7-201 protein_coding Danio_rerio 9e-20 100
ENSDART00000142060 hmgb2a-002 retained_intron Danio_rerio 9e-20 100
ENST00000264052 SP100-001 protein_coding Homo_sapiens 0 350
ENST00000403495 HMGB1P17-001 processed_pseudogene Homo_sapiens 0 291
ENST00000502802 HMGB1P3-001 processed_pseudogene Homo_sapiens 0 409
ENST00000569046 RP11-673C5.1-001 processed_pseudogene Homo_sapiens 0 497

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