C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000569046 RP11-673C5.1-001 ENSG00000259781 9606 - 15:71164770-71165415 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryENST00000569046
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary
ENST00000569046 0.020±0.00 0.067±0.00 0.130±0.00 0.621±0.03 0.977±0.95 2.922±0.00 0.727±0.00 2.896±0.00 1.674±0.00 1.111±0.90 0.813±0.69 3.518±3.36

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000120421 Gm15387-001 processed_pseudogene Mus_musculus 0 861
ENSMUST00000178049 Gm21596-201 processed_pseudogene Mus_musculus 0 861
ENSMUST00000179479 Hmgb1-ps9-201 processed_pseudogene Mus_musculus 0 856
ENSMUST00000093196 Hmgb1-002 protein_coding Mus_musculus 0 856
ENSMUST00000110505 Hmgb1-003 protein_coding Mus_musculus 0 856
ENSMUST00000085546 Hmgb1-001 protein_coding Mus_musculus 0 856
ENSMUST00000084171 Gm5518-201 processed_pseudogene Mus_musculus 0 850
ENSMUST00000179821 RP24-388H6.4-001 processed_pseudogene Mus_musculus 0 835
ENSMUST00000173370 Hmgb1-ps7-001 processed_pseudogene Mus_musculus 0 833
ENSMUST00000119715 Gm5937-001 processed_pseudogene Mus_musculus 0 830
ENSMUST00000118415 Hmgb1-ps3-001 processed_pseudogene Mus_musculus 0 813
ENSMUST00000117548 Hmgb1-ps2-001 processed_pseudogene Mus_musculus 0 806
ENSMUST00000118281 Hmgb1-ps4-001 processed_pseudogene Mus_musculus 0 787
ENSMUST00000120637 Gm13121-001 processed_pseudogene Mus_musculus 0 761
ENSMUST00000119927 Gm12331-001 processed_pseudogene Mus_musculus 0 758
ENSMUST00000176164 Gm3307-001 processed_pseudogene Mus_musculus 0 750
ENSMUST00000119503 Hmgb1-ps6-001 processed_pseudogene Mus_musculus 0 743
ENSMUST00000119350 Hmgb1-ps1-001 processed_pseudogene Mus_musculus 0 736
ENSMUST00000181542 Hmgb1-ps8-001 processed_pseudogene Mus_musculus 0 734
ENSMUST00000073196 Gm10075-201 pseudogene Mus_musculus 0 721
ENSMUST00000179326 Gm5473-201 processed_pseudogene Mus_musculus 0 708
ENSMUST00000118053 Gm13379-001 processed_pseudogene Mus_musculus 0 701
ENSMUST00000117362 Gm12568-001 processed_pseudogene Mus_musculus 0 699
ENSMUST00000120873 Gm13932-001 processed_pseudogene Mus_musculus 0 695
ENSMUST00000120842 Gm8152-001 processed_pseudogene Mus_musculus 0 691
ENSMUST00000121058 Hmgb1-ps5-001 processed_pseudogene Mus_musculus 0 688
ENSMUST00000180890 Gm26585-001 processed_pseudogene Mus_musculus 0 688
ENSMUST00000117107 Gm15560-001 processed_pseudogene Mus_musculus 0 686
ENSMUST00000119126 Gm9078-001 processed_pseudogene Mus_musculus 0 684
ENSMUST00000121589 Gm11645-001 processed_pseudogene Mus_musculus 0 673
ENSMUST00000162030 AC098736.2-001 processed_pseudogene Mus_musculus 0 658
ENSMUST00000117940 Hmgb1-rs18-001 processed_pseudogene Mus_musculus 0 649
ENSMUST00000128343 Gm3160-001 processed_pseudogene Mus_musculus 0 645
ENSMUST00000119716 Gm13170-001 processed_pseudogene Mus_musculus 0 638
ENSMUST00000190177 RP24-229N7.1-001 processed_pseudogene Mus_musculus 0 634
ENSMUST00000120969 Gm13153-001 processed_pseudogene Mus_musculus 0 621
ENSMUST00000118469 Gm15778-001 processed_pseudogene Mus_musculus 0 621
ENSMUST00000119277 Gm13155-001 processed_pseudogene Mus_musculus 0 616
ENSMUST00000121570 Gm8178-001 processed_pseudogene Mus_musculus 0 616
ENSMUST00000121222 Gm5396-001 processed_pseudogene Mus_musculus 0 614
ENSMUST00000139443 Hmgb1-006 retained_intron Mus_musculus 0 614
ENSMUST00000121009 Gm14049-001 processed_pseudogene Mus_musculus 0 612
ENSMUST00000120015 Gm6461-001 processed_pseudogene Mus_musculus 0 610
ENSMUST00000179328 Gm8807-201 processed_pseudogene Mus_musculus 0 601
ENSMUST00000184467 Gm7870-001 processed_pseudogene Mus_musculus 0 592
ENSMUST00000121756 Gm13024-001 processed_pseudogene Mus_musculus 0 590
ENSMUST00000118937 Gm13228-001 processed_pseudogene Mus_musculus 0 588
ENSMUST00000117499 Gm12261-001 processed_pseudogene Mus_musculus 0 582
ENSMUST00000183926 Gm27254-001 processed_pseudogene Mus_musculus 0 575
ENSMUST00000120970 Gm15750-001 processed_pseudogene Mus_musculus 0 558
ENSMUST00000119920 Gm13239-001 processed_pseudogene Mus_musculus 0 556
ENSMUST00000182688 Gm7909-001 processed_pseudogene Mus_musculus 0 553
ENSMUST00000121985 Gm14162-001 processed_pseudogene Mus_musculus 0 547
ENSMUST00000185927 Hmgb1-rs16-001 processed_pseudogene Mus_musculus 0 542
ENSMUST00000119766 Gm12118-001 processed_pseudogene Mus_musculus 0 540
ENSMUST00000138553 Hmgb1-007 protein_coding Mus_musculus 0 499
ENSMUST00000120180 Gm12587-001 processed_pseudogene Mus_musculus 0 497
ENSMUST00000186576 RP24-241N3.1-001 processed_pseudogene Mus_musculus 0 427
ENSMUST00000155086 Hmgb1-009 retained_intron Mus_musculus 0 416
ENSMUST00000133667 Hmgb1-004 retained_intron Mus_musculus 0 405
ENSMUST00000168653 Gm3851-001 processed_pseudogene Mus_musculus 0 388
ENSMUST00000120168 Gm13902-001 processed_pseudogene Mus_musculus 0 368
ENSMUST00000125605 Hmgb1-008 protein_coding Mus_musculus 0 368
ENSMUST00000116383 Gm14448-001 processed_pseudogene Mus_musculus 0 235
ENSMUST00000189012 RP23-338I1.1-001 processed_pseudogene Mus_musculus 5e-39 165

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