C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SP100 nuclear antigen
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000264052 SP100-001 ENSG00000067066 9606 + 2:230415942-230516527 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartLungMuscleOvaryPlacentaTestisENST00000264052
Transcript ID Bladder Brain Breast Colon Heart Lung Muscle Ovary Placenta Testis
ENST00000264052 1.020±0.00 0.174±0.00 1.380±0.00 2.014±0.56 1.804±0.00 4.232±0.00 0.712±0.00 2.089±0.34 2.360±0.94 1.017±0.63

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004AU CIL_0004AU_0004 CGP 2:230327184-230544090

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0000723 IMP telomere maintenance
GO:0003677 IEA DNA binding
GO:0003713 IDA transcription coactivator activity
GO:0003714 IDA transcription corepressor activity
GO:0005515 IPI protein binding
GO:0005634 IDA:IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0005730 IMP nucleolus
GO:0005737 IDA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006978 IDA DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator
GO:0008134 IPI transcription factor binding
GO:0010596 IMP negative regulation of endothelial cell migration
GO:0016032 IEA viral process
GO:0016605 IDA PML body
GO:0019221 TAS cytokine-mediated signaling pathway
GO:0019900 IPI kinase binding
GO:0019904 IPI protein domain specific binding
GO:0030870 IDA Mre11 complex
GO:0032526 IDA response to retinoic acid
GO:0032897 IDA negative regulation of viral transcription
GO:0034097 IDA response to cytokine
GO:0034340 IDA response to type I interferon
GO:0034341 IMP response to interferon-gamma
GO:0034399 IDA nuclear periphery
GO:0042802 IPI identical protein binding
GO:0042803 IPI protein homodimerization activity
GO:0043392 IDA negative regulation of DNA binding
GO:0043433 IDA negative regulation of sequence-specific DNA binding transcription factor activity
GO:0045765 IMP regulation of angiogenesis
GO:0045892 IMP negative regulation of transcription, DNA-templated
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0046826 IMP negative regulation of protein export from nucleus
GO:0048384 IC retinoic acid receptor signaling pathway
GO:0051091 IDA positive regulation of sequence-specific DNA binding transcription factor activity
GO:0051271 IMP negative regulation of cellular component movement
GO:0060333 IC interferon-gamma-mediated signaling pathway
GO:0060337 IC type I interferon signaling pathway
GO:0070087 IPI chromo shadow domain binding
GO:1902041 IMP regulation of extrinsic apoptotic signaling pathway via death domain receptors
GO:1902044 IMP regulation of Fas signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000110505 Hmgb1-003 protein_coding Mus_musculus 0 902
ENSMUST00000085546 Hmgb1-001 protein_coding Mus_musculus 0 902
ENSMUST00000178049 Gm21596-201 processed_pseudogene Mus_musculus 0 889
ENSMUST00000121222 Gm5396-001 processed_pseudogene Mus_musculus 0 496
ENSMUST00000121985 Gm14162-001 processed_pseudogene Mus_musculus 0 396
ENSMUST00000120180 Gm12587-001 processed_pseudogene Mus_musculus 0 350
ENSMUST00000155154 Ppm1e-002 processed_transcript Mus_musculus 0 243

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