C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted pseudogene 5555
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000120352 Gm5555-001 ENSMUSG00000083477 10090 + 5:49552257-49553270 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000120352
Transcript ID Adipose Bladder Brain Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000120352 0.078±0.04 0.008±0.00 0.376±0.29 0.072±0.00 0.150±0.00 0.052±0.02 0.524±0.41 0.065±0.02 0.045±0.01 0.230±0.02 0.049±0.00 0.063±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00033U CIL_00033U_0003 CGP 5:48389502-50058996

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000216879 NSFL1C-002 protein_coding Homo_sapiens 0 1351
ENST00000353088 NSFL1C-004 protein_coding Homo_sapiens 0 721
ENST00000381653 NSFL1C-003 nonsense_mediated_decay Homo_sapiens 0 922
ENST00000461211 NSFL1C-006 processed_transcript Homo_sapiens 0 1114
ENST00000470376 NSFL1C-001 nonsense_mediated_decay Homo_sapiens 0 728
ENST00000476071 NSFL1C-010 protein_coding Homo_sapiens 0 1328
ENST00000478168 NSFL1C-008 retained_intron Homo_sapiens 2e-28 130
ENST00000487086 NSFL1C-009 retained_intron Homo_sapiens 0 244
ENST00000489203 NSFL1C-007 nonsense_mediated_decay Homo_sapiens 0 398
ENST00000519856 RP11-697N18.3-001 processed_pseudogene Homo_sapiens 0 1033
ENST00000553571 NSFL1C-013 processed_transcript Homo_sapiens 0 259
ENST00000555359 NSFL1C-011 retained_intron Homo_sapiens 3e-25 119
ENST00000555568 NSFL1C-012 nonsense_mediated_decay Homo_sapiens 0 985
ENST00000555944 NSFL1C-005 nonsense_mediated_decay Homo_sapiens 0 959

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