C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: B cell leukemia/lymphoma 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000120537 Bcl3-001 ENSMUSG00000053175 10090 - 7:19808462-19822770 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000120537
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000120537 5.439±0.52 15.690±0.90 4.906±0.45 0.152±0.07 26.932±6.56 30.980±1.33 2.990±1.11 3.463±0.74 9.072±6.48 9.433±2.05 0.657±0.43 9.185±3.09 2.544±1.48 1.004±0.16

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000060 IEA protein import into nucleus, translocation
GO:0002268 IMP follicular dendritic cell differentiation
GO:0002315 IMP marginal zone B cell differentiation
GO:0002455 IMP humoral immune response mediated by circulating immunoglobulin
GO:0002467 IMP germinal center formation
GO:0003677 IDA DNA binding
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006974 IEA cellular response to DNA damage stimulus
GO:0007249 IEA I-kappaB kinase/NF-kappaB signaling
GO:0008134 IEA transcription factor binding
GO:0009615 IEA response to virus
GO:0010225 IEA response to UV-C
GO:0019730 IMP antimicrobial humoral response
GO:0030198 IMP extracellular matrix organization
GO:0030330 IEA DNA damage response, signal transduction by p53 class mediator
GO:0032729 IMP positive regulation of interferon-gamma production
GO:0032996 IEA Bcl3-Bcl10 complex
GO:0033257 IEA Bcl3/NF-kappaB2 complex
GO:0042088 IMP T-helper 1 type immune response
GO:0042345 IEA regulation of NF-kappaB import into nucleus
GO:0042536 IMP negative regulation of tumor necrosis factor biosynthetic process
GO:0042742 IMP defense response to bacterium
GO:0042771 IEA intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator
GO:0042832 IMP defense response to protozoan
GO:0042981 IEA regulation of apoptotic process
GO:0043066 IGI negative regulation of apoptotic process
GO:0043234 IEA protein complex
GO:0045064 IMP T-helper 2 cell differentiation
GO:0045082 IMP positive regulation of interleukin-10 biosynthetic process
GO:0045171 IEA intercellular bridge
GO:0045415 IEA negative regulation of interleukin-8 biosynthetic process
GO:0045727 IEA positive regulation of translation
GO:0045892 IEA negative regulation of transcription, DNA-templated
GO:0045893 IEA positive regulation of transcription, DNA-templated
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0048536 IMP spleen development
GO:0051101 IEA regulation of DNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000164227 BCL3-001 protein_coding Homo_sapiens 0 1349
ENST00000403534 BCL3-003 retained_intron Homo_sapiens 0 747
ENST00000444487 BCL3-005 protein_coding Homo_sapiens 0 699
ENST00000464319 BCL3-007 retained_intron Homo_sapiens 0 313
ENST00000473468 BCL3-004 processed_transcript Homo_sapiens 0 217
ENST00000474300 BCL3-006 retained_intron Homo_sapiens 0 645
ENST00000487394 BCL3-002 processed_transcript Homo_sapiens 0 233

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