C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 39 (zinc transporter), member 1, pseudogene
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000120862 Slc39a1-ps-001 ENSMUSG00000085401 10090 + 2:30159398-30160366 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000120862
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000120862 0.053±0.01 0.109±0.04 0.683±0.00 0.057±0.02 0.068±0.02 0.030±0.00 0.046±0.01 0.363±0.17 0.040±0.00 0.106±0.00 0.061±0.00 0.060±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005L7 CIL_0005L7_0002 CGP 2:30133746-30174069

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000310483 SLC39A1-003 protein_coding Homo_sapiens 0 1044
ENST00000356205 SLC39A1-001 protein_coding Homo_sapiens 0 1044
ENST00000368621 SLC39A1-004 protein_coding Homo_sapiens 0 1044
ENST00000368623 SLC39A1-002 protein_coding Homo_sapiens 0 1044
ENST00000413622 SLC39A1-005 protein_coding Homo_sapiens 0 680
ENST00000417348 SLC39A1-008 protein_coding Homo_sapiens 0 571
ENST00000426397 RP4-539M6.18-001 processed_pseudogene Homo_sapiens 0 388
ENST00000429040 SLC39A1-006 protein_coding Homo_sapiens 0 1033
ENST00000537590 SLC39A1-201 protein_coding Homo_sapiens 0 754
ENST00000617697 SLC39A1-202 protein_coding Homo_sapiens 0 1044
ENST00000621013 SLC39A1-203 protein_coding Homo_sapiens 0 1044

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