C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SWI/SNF related, matrix associated, actin depenent ragulator of chromatin, subfamily a, member 5, pseudogene
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000121843 Smarca5-ps-001 ENSMUSG00000052912 10090 + 4:145464298-145467420 transcribed_processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000121843
Transcript ID Bladder Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000121843 0.072±0.01 0.083±0.00 0.055±0.03 0.063±0.02 0.019±0.00 0.023±0.02 0.024±0.00 0.015±0.00 0.097±0.02 0.266±0.15 0.318±0.12

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000283131 SMARCA5-001 protein_coding Homo_sapiens 0 4034
ENST00000508573 SMARCA5-006 retained_intron Homo_sapiens 0 374
ENST00000515531 SMARCA5-004 retained_intron Homo_sapiens 0 219

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