C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000515531 SMARCA5-004 ENSG00000153147 9606 + 4:143543633-143544356 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainLiverENST00000515531
Transcript ID Brain Liver
ENST00000515531 60.127±0.00 29.406±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000121342 Gm13034-001 processed_pseudogene Mus_musculus 0 235
ENSMUST00000117628 Gm13135-001 processed_pseudogene Mus_musculus 0 230
ENSMUST00000121031 Gm13136-001 processed_pseudogene Mus_musculus 0 230
ENSMUST00000119840 Gm13140-001 processed_pseudogene Mus_musculus 0 224
ENSMUST00000142470 Smarca5-005 retained_intron Mus_musculus 0 224
ENSMUST00000122807 Smarca5-002 processed_transcript Mus_musculus 0 224
ENSMUST00000043359 Smarca5-001 protein_coding Mus_musculus 0 224
ENSMUST00000121843 Smarca5-ps-001 transcribed_processed_pseudogene Mus_musculus 0 219
ENSMUST00000150277 Smarca5-006 retained_intron Mus_musculus 1.4013e-45 187

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