C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted pseudogene 5580
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000122096 Gm5580-001 ENSMUSG00000060393 10090 + 6:116551164-116552399 processed_pseudogene

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartKidneyLiverOvaryPlacentaTestisENSMUST00000122096
Transcript ID Adrenal Brain Breast Colon Heart Kidney Liver Ovary Placenta Testis
ENSMUST00000122096 0.101±0.00 0.020±0.01 0.086±0.00 0.043±0.01 0.026±0.00 0.081±0.05 0.084±0.07 0.117±0.04 0.004±0.00 0.025±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00081B CIL_00081B_0002 VISTA 6:116052182-116663911

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000014887 eif4a3-001 protein_coding Danio_rerio 0 1101
ENSDART00000154277 eif4a3-002 nonsense_mediated_decay Danio_rerio 0 265
ENST00000269349 EIF4A3-001 protein_coding Homo_sapiens 0 1402
ENST00000570625 EIF4A3-010 retained_intron Homo_sapiens 2e-22 110
ENST00000575978 EIF4A3-002 retained_intron Homo_sapiens 2e-25 122
ENST00000576573 EIF4A3-009 retained_intron Homo_sapiens 0 403

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