C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: eukaryotic translation initiation factor 4A3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000269349 EIF4A3-001 ENSG00000141543 9606 - 17:80135214-80147183 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000269349
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000269349 23.670±0.00 33.202±0.00 1.989±0.00 11.515±4.85 9.937±5.71 15.525±9.25 6.594±4.84 22.900±16.82 7.665±4.98 18.114±14.12 6.769±4.80 29.623±15.93 43.615±5.74 38.237±9.31

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00005R CIL_00005R_0001 CGP 17:80101556-80147183
CIL_00031S CIL_00031S_0001 CGP 17:80135214-80209331

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000184 IMP nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0000288 TAS nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0000289 TAS nuclear-transcribed mRNA poly(A) tail shortening
GO:0000398 IC mRNA splicing, via spliceosome
GO:0003676 IEA nucleic acid binding
GO:0003729 IDA mRNA binding
GO:0004004 IDA ATP-dependent RNA helicase activity
GO:0005515 IPI protein binding
GO:0005524 IDA:IEA ATP binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0006200 IEA ATP catabolic process
GO:0006364 IEA rRNA processing
GO:0008143 IDA poly(A) binding
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0017148 IDA negative regulation of translation
GO:0019221 TAS cytokine-mediated signaling pathway
GO:0035145 IDA exon-exon junction complex
GO:0044822 IDA poly(A) RNA binding
GO:0045727 IMP positive regulation of translation
GO:0048701 IMP embryonic cranial skeleton morphogenesis
GO:0051028 IEA mRNA transport
GO:0071013 IDA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000026667 Eif4a3-001 protein_coding Mus_musculus 0 1408
ENSMUST00000077886 Gm8994-201 protein_coding Mus_musculus 0 1408
ENSMUST00000122096 Gm5580-001 processed_pseudogene Mus_musculus 0 1402
ENSMUST00000075809 Gm5576-201 processed_pseudogene Mus_musculus 0 1386
ENSDART00000014887 eif4a3-001 protein_coding Danio_rerio 0 1088
ENSMUST00000106253 Eif4a3-003 protein_coding Mus_musculus 0 660
ENSMUST00000134743 Eif4a3-002 processed_transcript Mus_musculus 0 329
ENSMUST00000129044 Eif4a3-005 processed_transcript Mus_musculus 0 263
ENSDART00000154277 eif4a3-002 nonsense_mediated_decay Danio_rerio 0 241
ENSMUST00000138849 Eif4a3-006 processed_transcript Mus_musculus 8e-26 122
ENSDART00000130781 eif4a2-001 protein_coding Danio_rerio 0.0000000000001 82
ENSDART00000134178 eif4a2-003 processed_transcript Danio_rerio 0.000000001 69

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