C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted pseudogene 7879
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000122204 Gm7879-001 ENSMUSG00000033036 10090 + 5:43913173-43913706 processed_pseudogene

Mus musculus EnsemblGRCm38

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainColonKidneyLiverPlacentaTestisENSMUST00000122204
Transcript ID Bladder Brain Colon Kidney Liver Placenta Testis
ENSMUST00000122204 0.108±0.00 0.452±0.09 0.235±0.00 0.150±0.05 0.745±0.56 0.186±0.21 0.148±0.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005WP CIL_0005WP_0002 CGP 5:43868809-43981762

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000304979 PPIH-001 protein_coding Homo_sapiens 0 774
ENST00000372549 PPIH-003 protein_coding Homo_sapiens 1e-32 143
ENST00000372550 PPIH-004 protein_coding Homo_sapiens 0 564
ENST00000403700 RP5-1170D6.1-001 processed_pseudogene Homo_sapiens 0 531
ENST00000428428 PPIHP1-001 processed_pseudogene Homo_sapiens 0 632
ENST00000436387 PPIH-005 protein_coding Homo_sapiens 2e-35 152
ENST00000440068 PPIH-002 protein_coding Homo_sapiens 0 673
ENST00000461351 PPIH-006 nonsense_mediated_decay Homo_sapiens 0 414

Loading