C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cyclin-dependent kinase 9 (CDC2-related kinase)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000123170 Cdk9-006 ENSMUSG00000009555 10090 - 2:32707849-32713076 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastLiverENSMUST00000123170
Transcript ID Adrenal Breast Liver
ENSMUST00000123170 12.503±3.78 8.487±0.00 4.680±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008YA CIL_0008YA_0002 VISTA 2:32608279-33209524
CIL_0000H9 CIL_0000H9_0002 CGP 2:32682609-32713076

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 ISO DNA binding
GO:0003682 IDA chromatin binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0006468 ISO protein phosphorylation
GO:0008024 IDA positive transcription elongation factor complex b
GO:0017069 IDA snRNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000373264 CDK9-001 protein_coding Homo_sapiens 0 673
ENST00000421939 CDK9-005 protein_coding Homo_sapiens 0 579
ENST00000491521 CDK9-003 processed_transcript Homo_sapiens 1e-19 100
ENST00000498339 CDK9-004 processed_transcript Homo_sapiens 0 494

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