C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sigma non-opioid intracellular receptor 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000123524 Sigmar1-008 ENSMUSG00000036078 10090 - 4:41754828-41756157 processed_transcript

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005SN CIL_0005SN_0002 CGP 4:41723836-41756157
CIL_0004KU CIL_0004KU_0002 CGP 4:41738493-41758695

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000378842 GALT-002 protein_coding Homo_sapiens 0 215
ENST00000450095 GALT-201 protein_coding Homo_sapiens 0 213
ENST00000465543 GALT-028 retained_intron Homo_sapiens 0 226
ENST00000468099 GALT-024 retained_intron Homo_sapiens 1.4013e-45 187
ENST00000472111 GALT-009 retained_intron Homo_sapiens 0 215
ENST00000473506 GALT-017 nonsense_mediated_decay Homo_sapiens 0 211
ENST00000473529 GALT-006 retained_intron Homo_sapiens 0 215
ENST00000485531 GALT-004 retained_intron Homo_sapiens 0 224
ENST00000487381 GALT-005 retained_intron Homo_sapiens 0 224
ENST00000489643 GALT-010 retained_intron Homo_sapiens 0 211
ENST00000554085 GALT-016 nonsense_mediated_decay Homo_sapiens 0 211
ENST00000554139 GALT-019 retained_intron Homo_sapiens 0 215
ENST00000554330 GALT-026 retained_intron Homo_sapiens 0 213
ENST00000554550 GALT-014 nonsense_mediated_decay Homo_sapiens 0 213
ENST00000554638 GALT-007 retained_intron Homo_sapiens 0 224
ENST00000554897 GALT-018 nonsense_mediated_decay Homo_sapiens 0 213
ENST00000554944 GALT-013 retained_intron Homo_sapiens 0 211
ENST00000555020 GALT-011 retained_intron Homo_sapiens 0 215
ENST00000555086 GALT-015 retained_intron Homo_sapiens 0 217
ENST00000555214 GALT-020 retained_intron Homo_sapiens 0 213
ENST00000556157 GALT-022 retained_intron Homo_sapiens 0 222
ENST00000556244 GALT-023 nonsense_mediated_decay Homo_sapiens 9.99967e-42 174
ENST00000556278 GALT-001 protein_coding Homo_sapiens 0 211
ENST00000556403 GALT-025 retained_intron Homo_sapiens 0 217
ENST00000556494 GALT-021 retained_intron Homo_sapiens 0 215
ENST00000557541 GALT-003 processed_transcript Homo_sapiens 0 211
ENST00000557706 GALT-012 retained_intron Homo_sapiens 0 235

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