C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: sigma non-opioid intracellular receptor 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000036078 Sigmar1 10090 - 4:41738493-41756157 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000059354 Sigmar1-001 41738493-41741359 protein_coding
  ENSMUST00000071561 Sigmar1-002 41738493-41741359 protein_coding
  ENSMUST00000123524 Sigmar1-008 41754828-41756157 processed_transcript
  ENSMUST00000133590 Sigmar1-004 41739506-41755399 processed_transcript
  ENSMUST00000142840 Sigmar1-007 41740449-41741186 retained_intron
  ENSMUST00000146655 Sigmar1-005 41740603-41741320 processed_transcript
  ENSMUST00000148223 Sigmar1-003 41739101-41745072 processed_transcript
  ENSMUST00000149647 Sigmar1-006 41740581-41741048 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000059354ENSMUST00000071561ENSMUST00000148223
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000059354 74.839±20.47 49.052±10.11 34.564±2.53 17.290±1.69 59.426±7.13 63.563±2.21 15.332±1.91 30.764±3.74 84.092±51.32 34.137±4.11 4.944±0.32 49.244±19.23 14.315±2.46 7.013±3.33
ENSMUST00000071561 N/A N/A N/A N/A 53.796±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000148223 N/A N/A N/A N/A N/A N/A N/A N/A 66.578±0.24 N/A N/A 18.740±0.00 11.667±0.00 2.281±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005SN CIL_0005SN_0002 CGP 4:41723836-41756157
CIL_0004KU CIL_0004KU_0002 CGP 4:41738493-41758695

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004872 IDA receptor activity
GO:0004985 IEA opioid receptor activity
GO:0005515 IPI protein binding
GO:0005635 IEA nuclear envelope
GO:0005783 IEA endoplasmic reticulum
GO:0005811 IEA lipid particle
GO:0005886 IEA plasma membrane
GO:0006869 IEA lipid transport
GO:0007399 IEA nervous system development
GO:0016021 IEA integral component of membrane
GO:0030054 IEA cell junction
GO:0038003 IEA opioid receptor signaling pathway
GO:0042995 IEA cell projection
GO:0043523 ISS regulation of neuron apoptotic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000011418 sigmar1 sigma non-opioid intracellular receptor 1 protein_coding Danio_rerio
ENSG00000147955 SIGMAR1 sigma non-opioid intracellular receptor 1 protein_coding Homo_sapiens

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