C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: suppressor of cytokine signaling 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000123826 Socs6-002 ENSMUSG00000056153 10090 - 18:88868174-88894216 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000123826
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000123826 4.406±1.50 5.976±2.19 0.964±0.10 8.598±4.16 12.540±2.01 0.707±0.00 1.589±0.57 1.215±0.63 4.235±0.97 11.060±4.36 2.407±0.90 0.245±0.03

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005829 TAS cytosol
GO:0009968 IEA negative regulation of signal transduction
GO:0016567 IEA protein ubiquitination
GO:0035556 IEA intracellular signal transduction
GO:0040008 IMP regulation of growth
GO:0050868 IDA negative regulation of T cell activation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000081449 BX640518.1-201 protein_coding Danio_rerio 0 407
ENST00000397942 SOCS6-001 protein_coding Homo_sapiens 0 1938
ENST00000398297 AL590763.5-001 processed_pseudogene Homo_sapiens 0 414
ENST00000528055 RP11-160H12.3-001 processed_pseudogene Homo_sapiens 0 941
ENST00000582322 SOCS6-002 protein_coding Homo_sapiens 0 1938

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