C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: suppressor of cytokine signaling 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000125362 Socs6-003 ENSMUSG00000056153 10090 - 18:88868495-88894352 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000125362
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000125362 2.859±0.91 5.688±1.98 2.057±0.19 1.473±0.37 3.562±1.63 2.927±0.94 2.792±0.25 4.526±0.76 2.010±0.55 3.530±1.03 3.245±0.45 3.153±1.57 3.724±1.63 1.709±0.13

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005829 TAS cytosol
GO:0009968 IEA negative regulation of signal transduction
GO:0016567 IEA protein ubiquitination
GO:0035556 IEA intracellular signal transduction
GO:0040008 IMP regulation of growth
GO:0050868 IDA negative regulation of T cell activation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000081449 BX640518.1-201 protein_coding Danio_rerio 0 407
ENST00000397942 SOCS6-001 protein_coding Homo_sapiens 0 1855
ENST00000398297 AL590763.5-001 processed_pseudogene Homo_sapiens 0 414
ENST00000528055 RP11-160H12.3-001 processed_pseudogene Homo_sapiens 0 941
ENST00000582322 SOCS6-002 protein_coding Homo_sapiens 0 1855

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