C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: chemokine (C-X-C motif) ligand 16
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000126391 Cxcl16-002 ENSMUSG00000018920 10090 - 11:70454238-70459408 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainColonKidneyLiverMuscleOvaryPlacentaENSMUST00000126391
Transcript ID Adipose Bladder Brain Colon Kidney Liver Muscle Ovary Placenta
ENSMUST00000126391 11.596±0.00 9.369±0.02 0.525±0.30 7.446±0.04 23.843±2.11 1.633±1.33 0.508±0.34 8.024±0.60 1.891±1.23

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001RD CIL_0001RD_0002 CGP 11:70451919-70459984
CIL_0001RE CIL_0001RE_0002 CGP 11:70453983-70466202

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005041 IDA low-density lipoprotein receptor activity
GO:0005044 IDA scavenger receptor activity
GO:0006898 IEA receptor-mediated endocytosis
GO:0008009 IDA chemokine activity
GO:0030307 IEA positive regulation of cell growth
GO:0030335 IEA positive regulation of cell migration
GO:0034341 IEA response to interferon-gamma
GO:0034612 IEA response to tumor necrosis factor
GO:0048247 IEA lymphocyte chemotaxis

Homologs

No Homologs available.

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