C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: FAD-dependent oxidoreductase domain containing 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000127996 Foxred1-001 ENSMUSG00000039048 10090 - 9:35204208-35211055 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000127996
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000127996 17.194±7.69 7.098±1.89 7.712±0.72 5.749±1.46 8.426±1.59 5.300±1.55 26.347±4.68 16.235±3.81 11.199±2.33 4.454±0.34 5.216±0.97 4.945±1.59 6.354±3.39 8.222±0.90

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007W7 CIL_0007W7_0002 VISTA 9:35123876-35727017
CIL_0002HQ CIL_0002HQ_0002 CGP 9:35200175-35247973

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005739 IDA mitochondrion
GO:0008150 ND biological_process
GO:0016021 IEA integral component of membrane
GO:0016491 IEA oxidoreductase activity
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000263578 FOXRED1-002 protein_coding Homo_sapiens 0 1306
ENST00000525083 FOXRED1-004 retained_intron Homo_sapiens 0 412
ENST00000525770 FOXRED1-005 nonsense_mediated_decay Homo_sapiens 0 1070
ENST00000527004 FOXRED1-003 nonsense_mediated_decay Homo_sapiens 0 778
ENST00000530642 FOXRED1-008 retained_intron Homo_sapiens 0 662
ENST00000532101 FOXRED1-010 retained_intron Homo_sapiens 0 634
ENST00000532125 FOXRED1-001 protein_coding Homo_sapiens 0 1269
ENST00000532590 FOXRED1-017 retained_intron Homo_sapiens 0 372
ENST00000533395 FOXRED1-016 retained_intron Homo_sapiens 0 287
ENST00000534011 FOXRED1-006 processed_transcript Homo_sapiens 0 1050
ENST00000534315 FOXRED1-007 retained_intron Homo_sapiens 0 778

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