C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: FAD-dependent oxidoreductase domain containing 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000039048 Foxred1 10090 - 9:35204206-35211055 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000043805 Foxred1-002 35204208-35210980 protein_coding
  ENSMUST00000127996 Foxred1-001 35204208-35211055 protein_coding
  ENSMUST00000130072 Foxred1-005 35204208-35210954 retained_intron
  ENSMUST00000135054 Foxred1-011 35205185-35206234 protein_coding
  ENSMUST00000138692 Foxred1-008 35207548-35210897 nonsense_mediated_decay
  ENSMUST00000139703 Foxred1-010 35207538-35210922 nonsense_mediated_decay
  ENSMUST00000140177 Foxred1-012 35204866-35205922 retained_intron
  ENSMUST00000142595 Foxred1-009 35206223-35210996 protein_coding
  ENSMUST00000143039 Foxred1-004 35204208-35210970 retained_intron
  ENSMUST00000151082 Foxred1-006 35206087-35210946 retained_intron
  ENSMUST00000151658 Foxred1-003 35204208-35211001 nonsense_mediated_decay
  ENSMUST00000154691 Foxred1-007 35204206-35210936 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000127996ENSMUST00000130072ENSMUST00000139703ENSMUST00000140177ENSMUST00000143039ENSMUST00000151082ENSMUST00000151658ENSMUST00000154691
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000127996 17.194±7.69 7.098±1.89 7.712±0.72 5.749±1.46 8.426±1.59 5.300±1.55 26.347±4.68 16.235±3.81 11.199±2.33 4.454±0.34 5.216±0.97 4.945±1.59 6.354±3.39 8.222±0.90
ENSMUST00000130072 N/A 2.537±0.00 2.946±0.71 3.173±1.04 2.431±0.31 1.718±0.24 N/A N/A 2.451±0.09 1.585±0.00 1.617±0.42 2.939±0.61 1.463±0.23 1.279±0.50
ENSMUST00000139703 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 9.280±0.00 6.424±0.00 5.924±0.00
ENSMUST00000140177 N/A N/A N/A N/A N/A 9.260±1.04 N/A N/A N/A N/A N/A 7.627±0.00 N/A N/A
ENSMUST00000143039 2.697±0.00 2.236±0.26 3.298±0.83 6.016±2.37 1.856±0.36 1.828±0.45 N/A N/A 2.752±0.32 2.127±0.17 1.064±0.10 2.880±0.84 2.265±0.65 2.012±0.83
ENSMUST00000151082 N/A N/A N/A 9.605±0.00 N/A N/A N/A N/A N/A N/A N/A 6.601±0.00 5.585±1.81 2.308±0.00
ENSMUST00000151658 N/A 3.221±0.00 N/A N/A N/A N/A N/A N/A 3.022±0.00 2.171±0.00 N/A 2.694±0.27 3.287±0.00 N/A
ENSMUST00000154691 N/A 3.522±0.86 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.831±0.00 1.911±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007W7 CIL_0007W7_0002 VISTA 9:35123876-35727017
CIL_0002HQ CIL_0002HQ_0002 CGP 9:35200175-35247973

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005739 IDA mitochondrion
GO:0008150 ND biological_process
GO:0016021 IEA integral component of membrane
GO:0016491 IEA oxidoreductase activity
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000060790 foxred1 FAD-dependent oxidoreductase domain containing 1 protein_coding Danio_rerio
ENSG00000110074 FOXRED1 FAD-dependent oxidoreductase domain containing 1 protein_coding Homo_sapiens

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