C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: CUB and Sushi multiple domains 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000129619 Csmd2-002 ENSMUSG00000028804 10090 + 4:127987857-128339657 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeColonHeartLiverOvaryPlacentaENSMUST00000129619
Transcript ID Adipose Colon Heart Liver Ovary Placenta
ENSMUST00000129619 0.064±0.00 0.064±0.02 0.014±0.01 0.003±0.00 0.054±0.00 0.022±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001N2 CIL_0001N2_0002 CGP 4:127987857-128567656

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000241312 CSMD2-001 nonsense_mediated_decay Homo_sapiens 0 2135
ENST00000338325 CSMD2-004 protein_coding Homo_sapiens 9.94922e-44 182
ENST00000373381 CSMD2-201 protein_coding Homo_sapiens 0 2401
ENST00000373388 CSMD2-202 protein_coding Homo_sapiens 0 2135
ENST00000471438 CSMD2-007 processed_transcript Homo_sapiens 0 209
ENST00000619121 CSMD2-203 protein_coding Homo_sapiens 0 2135

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