C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001N2_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000121904-ENSG00000121904 CGP 9606 1:33513999-34165842
GeneTranscriptPositionBiotype
ENSG00000121904 (CSMD2)
CUB and Sushi multiple domains 2 		ENST00000241312 (CSMD2-001) 33514009-34165842 nonsense_mediated_decay
ENST00000338325 (CSMD2-004) 33772108-33814219 protein_coding
ENST00000373377 (CSMD2-003) 33598689-33626584 protein_coding
ENST00000373380 (CSMD2-002) 33591807-33709504 protein_coding
ENST00000373381 (CSMD2-201) 33513999-34165274 protein_coding
ENST00000373388 (CSMD2-202) 33513999-34165842 protein_coding
ENST00000465819 (CSMD2-006) 33559353-33572590 processed_transcript
ENST00000471438 (CSMD2-007) 33792497-33819808 processed_transcript
ENST00000489419 (CSMD2-005) 33598689-33602477 processed_transcript
ENST00000619121 (CSMD2-203) 33513999-34165842 protein_coding
ENSG00000176256 (HMGB4)
high mobility group box 4 		ENST00000425537 (HMGB4-003) 33864077-33864791 processed_transcript
ENST00000458277 (HMGB4-002) 33862181-33863463 processed_transcript
ENST00000519684 (HMGB4-001) 33860475-33864791 protein_coding
ENST00000522796 (HMGB4-004) 33860500-33864791 protein_coding
ENSG00000227000 (HSPD1P14)
heat shock 60kDa protein 1 (chaperonin) pseudogene 14 		ENST00000432666 (HSPD1P14-001) 33838523-33840140 processed_pseudogene
ENSG00000231163 (CSMD2-AS1)
CSMD2 antisense RNA 1 		ENST00000414868 (CSMD2-AS1-004) 33870226-33873811 antisense
ENST00000425631 (CSMD2-AS1-001) 33868953-33885458 antisense
ENST00000431046 (CSMD2-AS1-006) 33875466-33885423 antisense
ENST00000432447 (CSMD2-AS1-002) 33870226-33873708 antisense
ENST00000434181 (CSMD2-AS1-003) 33870197-33873767 antisense
ENST00000438719 (CSMD2-AS1-005) 33870551-33873647 antisense
CIL_0001N2_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000028804-ENSMUSG00000028804 CGP 10090 4:127987857-128567656
GeneTranscriptPositionBiotype
ENSMUSG00000028804 (Csmd2)
CUB and Sushi multiple domains 2 		ENSMUST00000129619 (Csmd2-002) 127987857-128339657 processed_transcript
ENSMUST00000139561 (Csmd2-005) 128547936-128552733 processed_transcript
ENSMUST00000144298 (Csmd2-006) 127988044-128419617 retained_intron
ENSMUST00000148247 (Csmd2-003) 128477154-128501177 processed_transcript
ENSMUST00000152206 (Csmd2-004) 128519109-128528312 processed_transcript
ENSMUST00000184063 (Csmd2-001) 128058962-128567656 protein_coding
ENSMUSG00000048686 (Hmgb4)
high-mobility group box 4 		ENSMUST00000053830 (Hmgb4-001) 128260212-128260957 protein_coding
ENSMUSG00000085717 (Hmgb4os)
high-mobility group box 4, opposite strand 		ENSMUST00000131581 (Hmgb4os-001) 128261044-128262990 antisense
ENSMUSG00000087459 (Csmd2os)
CUB and Sushi multiple domains 2, opposite strand 		ENSMUST00000153357 (Csmd2os-001) 128133523-128164259 antisense
ENSMUST00000179945 (Csmd2os-201) 128133523-128166967 antisense

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001N2_0001ENSG00000121904ENST00000241312ENST00000338325ENST00000373377ENST00000373380ENST00000373381ENST00000373388ENST00000465819ENST00000471438ENST00000489419ENST00000619121ENSG00000176256ENST00000425537ENST00000458277ENST00000519684ENST00000522796ENSG00000227000ENST00000432666ENSG00000231163ENST00000414868ENST00000425631ENST00000431046ENST00000432447ENST00000434181ENST00000438719CIL_0001N2_0002ENSMUSG00000028804ENSMUST00000129619ENSMUST00000139561ENSMUST00000144298ENSMUST00000148247ENSMUST00000152206ENSMUST00000184063ENSMUSG00000048686ENSMUST00000053830ENSMUSG00000085717ENSMUST00000131581ENSMUSG00000087459ENSMUST00000153357ENSMUST00000179945
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001N2_0001ENSG00000121904ENST00000241312ENST00000338325ENST00000373377ENST00000373380ENST00000373381ENST00000373388ENST00000489419ENSG00000176256ENST00000425537ENST00000519684ENSG00000227000ENST00000432666ENSG00000231163ENST00000414868ENST00000425631ENST00000432447ENST00000434181ENST00000438719CIL_0001N2_0002ENSMUSG00000028804ENSMUST00000129619ENSMUST00000139561ENSMUST00000144298ENSMUST00000148247ENSMUST00000152206ENSMUST00000184063ENSMUSG00000048686ENSMUST00000053830ENSMUSG00000085717ENSMUST00000131581ENSMUSG00000087459ENSMUST00000153357ENSMUST00000179945
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000121904 ENST00000241312 0.007±0.00 N/A N/A N/A N/A 0.019±0.00 0.007±0.00 0.022±0.00 N/A 0.022±0.00 N/A 0.057±0.00 0.006±0.00 N/A
ENST00000338325 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.031±0.00 N/A
ENST00000373377 N/A N/A N/A N/A 0.032±0.00 0.102±0.00 N/A N/A 0.277±0.00 0.029±0.00 0.088±0.00 N/A N/A 0.195±0.04
ENST00000373380 0.016±0.00 0.130±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000373381 N/A N/A N/A 0.256±0.00 0.027±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000373388 N/A N/A N/A 0.478±0.00 N/A 0.017±0.00 0.003±0.00 N/A N/A N/A N/A N/A 0.004±0.00 N/A
ENST00000465819 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000471438 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000489419 0.072±0.00 0.179±0.00 0.200±0.00 N/A N/A N/A 0.031±0.00 0.081±0.00 0.005±0.00 N/A N/A 0.088±0.03 0.039±0.00 N/A
ENST00000619121 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000176256 ENST00000425537 0.173±0.00 0.508±0.00 N/A 0.028±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 276.358±23.67
ENST00000458277 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000519684 N/A N/A N/A 0.031±0.00 0.055±0.00 N/A N/A N/A 0.021±0.00 N/A 0.290±0.00 N/A N/A 8.998±0.00
ENST00000522796 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000227000 ENST00000432666 N/A N/A N/A N/A N/A N/A N/A 0.191±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000231163 ENST00000414868 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.652±0.00
ENST00000425631 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.022±0.00 N/A 2.695±0.00
ENST00000431046 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000432447 N/A 0.068±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.368±0.00
ENST00000434181 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.177±1.32
ENST00000438719 N/A N/A 0.468±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000028804 ENSMUST00000129619 0.064±0.00 N/A N/A N/A N/A 0.064±0.02 0.014±0.01 N/A 0.003±0.00 N/A N/A 0.054±0.00 0.022±0.01 N/A
ENSMUST00000139561 N/A N/A N/A N/A 0.102±0.02 N/A N/A N/A N/A N/A N/A 0.225±0.00 N/A N/A
ENSMUST00000144298 N/A N/A 0.011±0.00 N/A 0.020±0.00 0.053±0.00 N/A N/A N/A 0.015±0.01 N/A 0.033±0.00 0.010±0.00 N/A
ENSMUST00000148247 0.023±0.00 N/A N/A N/A 0.050±0.00 N/A N/A 0.010±0.00 0.003±0.00 N/A N/A 0.033±0.01 0.018±0.01 0.271±0.00
ENSMUST00000152206 N/A N/A N/A N/A N/A N/A 0.048±0.00 N/A N/A N/A N/A 0.325±0.03 N/A N/A
ENSMUST00000184063 0.006±0.00 N/A 0.002±0.00 4.716±3.46 0.021±0.01 0.022±0.01 0.003±0.00 0.007±0.01 0.006±0.01 0.002±0.00 0.008±0.00 0.045±0.03 0.007±0.00 0.187±0.13
ENSMUSG00000048686 ENSMUST00000053830 N/A N/A N/A 0.042±0.01 N/A N/A 0.121±0.09 0.129±0.06 0.094±0.00 N/A N/A 0.037±0.00 N/A 248.409±114.04
ENSMUSG00000085717 ENSMUST00000131581 N/A N/A N/A 0.020±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.066±1.97
ENSMUSG00000087459 ENSMUST00000153357 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.064±0.00
ENSMUST00000179945 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.092±0.00

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