C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000130145 Smg6-003 ENSMUSG00000038290 10090 + 11:74930520-75164448 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaENSMUST00000130145
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta
ENSMUST00000130145 7.752±1.33 8.555±1.49 8.829±0.00 10.249±0.72 7.355±0.70 4.440±0.73 9.713±1.19 3.310±1.24 10.186±1.21 15.015±0.10 12.737±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007RP CIL_0007RP_0002 VISTA 11:74746156-75348336
CIL_00093G CIL_00093G_0002 VISTA 11:74749027-75350435

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000263073 SMG6-001 protein_coding Homo_sapiens 0 2593
ENST00000354901 SMG6-002 protein_coding Homo_sapiens 0 2593
ENST00000536871 SMG6-005 protein_coding Homo_sapiens 0 2311
ENST00000570606 SMG6-021 protein_coding Homo_sapiens 0 490
ENST00000570659 SMG6-019 protein_coding Homo_sapiens 0 649
ENST00000570668 SMG6-013 protein_coding Homo_sapiens 0 473
ENST00000570756 SMG6-004 processed_transcript Homo_sapiens 0 1393
ENST00000570874 SMG6-011 retained_intron Homo_sapiens 0 542
ENST00000571442 SMG6-015 protein_coding Homo_sapiens 0 656
ENST00000572205 SMG6-018 protein_coding Homo_sapiens 0 564
ENST00000572369 SMG6-008 protein_coding Homo_sapiens 0 680
ENST00000573153 SMG6-012 processed_transcript Homo_sapiens 0 580
ENST00000573166 SMG6-003 processed_transcript Homo_sapiens 0 1703
ENST00000573827 SMG6-023 processed_transcript Homo_sapiens 0 699
ENST00000574501 SMG6-022 retained_intron Homo_sapiens 0 544
ENST00000575176 SMG6-009 protein_coding Homo_sapiens 0 601
ENST00000575338 SMG6-007 processed_transcript Homo_sapiens 0 379
ENST00000575454 SMG6-010 protein_coding Homo_sapiens 0 918
ENST00000575663 SMG6-014 protein_coding Homo_sapiens 0 647
ENST00000576218 SMG6-020 processed_transcript Homo_sapiens 0 1160
ENST00000619757 HIC1-006 protein_coding Homo_sapiens 0 544

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