C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Ly1 antibody reactive clone
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000130721 Lyar-005 ENSMUSG00000067367 10090 + 5:38220482-38230703 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartLiverLungOvaryENSMUST00000130721
Transcript ID Adipose Adrenal Brain Breast Colon Heart Liver Lung Ovary
ENSMUST00000130721 1.044±0.69 2.126±1.19 2.670±0.00 1.056±0.14 0.456±0.09 1.413±0.26 0.640±0.15 1.493±0.62 1.365±0.69

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00096B CIL_00096B_0002 VISTA 5:37667623-38269196
CIL_0008QQ CIL_0008QQ_0002 VISTA 5:37760247-38361421
CIL_00096M CIL_00096M_0002 VISTA 5:37765055-38366694
CIL_0008ZA CIL_0008ZA_0002 VISTA 5:37806142-38406996

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005730 IDA nucleolus
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000343470 LYAR-001 protein_coding Homo_sapiens 0 475
ENST00000452476 LYAR-201 protein_coding Homo_sapiens 0 475
ENST00000513174 LYAR-002 protein_coding Homo_sapiens 0 300

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