C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protein phosphatase 1, catalytic subunit, beta isoform
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000131300 Ppp1cb-002 ENSMUSG00000014956 10090 + 5:32459152-32517433 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000131300
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000131300 6.286±2.79 4.620±1.10 16.884±7.72 4.640±1.39 11.108±3.68 11.362±2.82 6.014±1.41 3.413±0.77 9.844±0.43 22.378±0.00 8.373±6.77 20.460±11.40 2.357±0.40

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00013Q CIL_00013Q_0002 CGP 5:32232708-32517433

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004722 IDA protein serine/threonine phosphatase activity
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0005977 IEA glycogen metabolic process
GO:0006470 IDA protein dephosphorylation
GO:0007049 IEA cell cycle
GO:0016791 IDA phosphatase activity
GO:0017018 ISS myosin phosphatase activity
GO:0030155 ISS regulation of cell adhesion
GO:0032922 IDA circadian regulation of gene expression
GO:0042752 IMP regulation of circadian rhythm
GO:0043153 IMP entrainment of circadian clock by photoperiod
GO:0046872 IEA metal ion binding
GO:0050115 ISS myosin-light-chain-phosphatase activity
GO:0051301 IEA cell division
GO:0072357 ISS PTW/PP1 phosphatase complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000296122 PPP1CB-003 protein_coding Homo_sapiens 0 1796
ENST00000358506 PPP1CB-201 protein_coding Homo_sapiens 0 1796
ENST00000395366 PPP1CB-001 protein_coding Homo_sapiens 0 1934
ENST00000418910 PPP1CB-009 protein_coding Homo_sapiens 0 226
ENST00000420282 PPP1CB-006 protein_coding Homo_sapiens 0 641
ENST00000427786 PPP1CB-008 nonsense_mediated_decay Homo_sapiens 0 207
ENST00000441461 PPP1CB-005 protein_coding Homo_sapiens 0 706
ENST00000455580 PPP1CB-004 protein_coding Homo_sapiens 0 817
ENST00000462832 SPDYA-003 processed_transcript Homo_sapiens 0 717
ENST00000464273 PPP1CB-007 retained_intron Homo_sapiens 0 375

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