C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transmembrane protein 52
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000131599 Tmem52-002 ENSMUSG00000023153 10090 + 4:155469114-155470415 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000131599
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000131599 0.974±0.00 0.453±0.00 0.224±0.00 10.050±7.10 0.556±0.18 0.511±0.22 1.336±0.29 0.058±0.04 0.454±0.13 14.543±3.14 2.489±1.66 0.214±0.00 1.855±0.41

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007QV CIL_0007QV_0002 VISTA 4:154934679-155536167

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000310991 TMEM52-001 protein_coding Homo_sapiens 0 335
ENST00000378598 TMEM52-005 protein_coding Homo_sapiens 0.000000001 68
ENST00000416272 TMEM52-002 protein_coding Homo_sapiens 2e-20 102
ENST00000470931 TMEM52-003 nonsense_mediated_decay Homo_sapiens 0 383
ENST00000602604 TMEM52-006 retained_intron Homo_sapiens 0.0000000006 69

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