C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nuclear factor of activated T cells 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000133026 Nfat5-001 ENSMUSG00000003847 10090 + 8:107293470-107379517 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000133026
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000133026 6.157±3.80 10.364±1.49 3.746±0.35 1.744±0.40 5.060±1.18 3.134±1.28 1.999±0.15 4.480±1.81 1.435±0.51 8.481±3.19 0.591±0.08 7.071±2.89 2.309±0.29 2.566±1.84

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008KB CIL_0008KB_0002 VISTA 8:107038845-107639359
CIL_0004I1 CIL_0004I1_0002 CGP 8:107293470-107403206

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001816 IDA cytokine production
GO:0003677 IDA DNA binding
GO:0003700 ISS sequence-specific DNA binding transcription factor activity
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006351 ISS transcription, DNA-templated
GO:0010628 IDA positive regulation of gene expression
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0070884 IDA regulation of calcineurin-NFAT signaling cascade

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000135230 chd7-001 protein_coding Danio_rerio 0.0007 53
ENSDART00000016208 chd7-201 protein_coding Danio_rerio 0.0007 53
ENST00000349945 NFAT5-201 protein_coding Homo_sapiens 0 8685
ENST00000354436 NFAT5-001 protein_coding Homo_sapiens 0 7810
ENST00000393742 NFAT5-002 protein_coding Homo_sapiens 0 8148
ENST00000426654 NFAT5-004 nonsense_mediated_decay Homo_sapiens 0 8685
ENST00000548843 AVIL-003 retained_intron Homo_sapiens 0.00003 55
ENST00000549548 AVIL-004 retained_intron Homo_sapiens 0.00003 55
ENST00000549753 AVIL-009 retained_intron Homo_sapiens 0.00001 55
ENST00000562429 NFAT5-008 retained_intron Homo_sapiens 0 361
ENST00000563474 NFAT5-011 nonsense_mediated_decay Homo_sapiens 0 510
ENST00000565301 NFAT5-007 protein_coding Homo_sapiens 0 527
ENST00000566899 NFAT5-006 protein_coding Homo_sapiens 0 6000
ENST00000567239 NFAT5-009 protein_coding Homo_sapiens 0 6307
ENST00000567990 NFAT5-003 nonsense_mediated_decay Homo_sapiens 0 1299
ENST00000568832 NFAT5-010 retained_intron Homo_sapiens 0 496

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