C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: chimerin 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000133315 Chn2-009 ENSMUSG00000004633 10090 + 6:54039613-54220570 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonKidneyLiverLungOvaryENSMUST00000133315
Transcript ID Adipose Adrenal Breast Colon Kidney Liver Lung Ovary
ENSMUST00000133315 7.369±0.00 11.101±6.57 2.261±0.13 6.182±1.75 8.482±0.49 9.535±0.75 4.876±0.61 6.793±1.61

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003ZN CIL_0003ZN_0002 CGP 6:53873379-54301810
CIL_0003ZM CIL_0003ZM_0002 CGP 6:54039554-54330200

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000222792 CHN2-001 protein_coding Homo_sapiens 0 484
ENST00000409350 CHN2-009 protein_coding Homo_sapiens 0 355
ENST00000409922 CHN2-008 processed_transcript Homo_sapiens 0 355
ENST00000409964 CHN2-013 processed_transcript Homo_sapiens 0 257
ENST00000412536 CHN2-015 processed_transcript Homo_sapiens 3e-40 169
ENST00000435288 CHN2-204 protein_coding Homo_sapiens 0 453
ENST00000439384 CHN2-010 protein_coding Homo_sapiens 0 239
ENST00000474070 CHN2-017 nonsense_mediated_decay Homo_sapiens 0 355
ENST00000478128 CHN2-016 processed_transcript Homo_sapiens 0 278
ENST00000482820 CHN2-014 processed_transcript Homo_sapiens 1e-39 167
ENST00000491856 CHN2-003 retained_intron Homo_sapiens 0 359
ENST00000495789 CHN2-206 protein_coding Homo_sapiens 0 355
ENST00000539389 CHN2-207 protein_coding Homo_sapiens 1e-39 167
ENST00000539406 CHN2-208 protein_coding Homo_sapiens 0 243

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