C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ankyrin repeat domain 54
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000133541 Ankrd54-002 ENSMUSG00000033055 10090 - 15:79053104-79062885 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000133541
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000133541 1.562±0.14 1.164±0.00 2.773±0.00 2.739±0.44 2.254±0.04 0.877±0.04 1.813±0.49 4.486±2.08 1.961±0.12 0.189±0.03 2.126±0.71 2.060±0.22

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00099H CIL_00099H_0002 VISTA 15:78863840-79464236
CIL_0008KJ CIL_0008KJ_0002 VISTA 15:78865517-79466323
CIL_0008BX CIL_0008BX_0002 VISTA 15:78873761-79474273
CIL_0008KA CIL_0008KA_0002 VISTA 15:78875821-79476550
CIL_00082J CIL_00082J_0002 VISTA 15:78908803-79509777
CIL_0008C1 CIL_0008C1_0002 VISTA 15:78918952-79520098
CIL_00082K CIL_00082K_0002 VISTA 15:78923635-79524085
CIL_0008MM CIL_0008MM_0002 VISTA 15:79023554-79624112
CIL_0003QH CIL_0003QH_0002 CGP 15:79053094-79094400

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000215941 ANKRD54-001 protein_coding Homo_sapiens 0 857
ENST00000406423 ANKRD54-010 protein_coding Homo_sapiens 0 455
ENST00000411961 ANKRD54-004 protein_coding Homo_sapiens 0 427
ENST00000413497 ANKRD54-008 nonsense_mediated_decay Homo_sapiens 0 643
ENST00000433115 ANKRD54P1-001 processed_pseudogene Homo_sapiens 2e-31 139
ENST00000434930 ANKRD54-005 protein_coding Homo_sapiens 0 706
ENST00000458278 ANKRD54-006 protein_coding Homo_sapiens 0 440
ENST00000464849 ANKRD54-009 processed_transcript Homo_sapiens 0 453
ENST00000498417 ANKRD54-002 processed_transcript Homo_sapiens 0 270
ENST00000609454 ANKRD54-013 protein_coding Homo_sapiens 0 268

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