C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: chloride channel Ka
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000133676 Clcnka-003 ENSMUSG00000033770 10090 - 4:141395119-141398574 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; LiverPlacentaENSMUST00000133676
Transcript ID Liver Placenta
ENSMUST00000133676 0.006±0.00 0.019±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007QM CIL_0007QM_0002 VISTA 4:141236761-141837859
CIL_0001WZ CIL_0001WZ_0002 CGP 4:141384610-141416014

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005247 IEA voltage-gated chloride channel activity
GO:0006821 IEA chloride transport
GO:0016323 IDA basolateral plasma membrane
GO:0034220 IEA ion transmembrane transport
GO:0044070 IEA regulation of anion transport
GO:0050878 IMP regulation of body fluid levels
GO:0072053 IMP renal inner medulla development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000331433 CLCNKA-001 protein_coding Homo_sapiens 0 562
ENST00000375692 CLCNKA-002 protein_coding Homo_sapiens 0 562
ENST00000439316 CLCNKA-007 protein_coding Homo_sapiens 0 220
ENST00000464764 CLCNKA-003 processed_transcript Homo_sapiens 0 261
ENST00000495784 CLCNKA-004 processed_transcript Homo_sapiens 0 512

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