C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: homeobox A3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000134831 Hoxa3-004 ENSMUSG00000079560 10090 - 6:52172571-52183855 protein_coding

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007OD CIL_0007OD_0003 UCNEbase 6:51462736-52602127
CIL_0008V2 CIL_0008V2_0002 VISTA 6:51578612-52179694
CIL_0008QL CIL_0008QL_0002 VISTA 6:51878169-52478777
CIL_000911 CIL_000911_0002 VISTA 6:51970433-52571615
CIL_000811 CIL_000811_0002 VISTA 6:52019082-52620287
CIL_00097P CIL_00097P_0002 VISTA 6:52142617-52744529

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001974 IMP blood vessel remodeling
GO:0008284 IMP positive regulation of cell proliferation
GO:0009887 IMP organ morphogenesis
GO:0009952 IGI anterior/posterior pattern specification
GO:0010159 IGI specification of organ position
GO:0021615 IGI glossopharyngeal nerve morphogenesis
GO:0030878 IMP thyroid gland development
GO:0048538 IGI thymus development
GO:0048645 IMP organ formation
GO:0048704 IGI embryonic skeletal system morphogenesis
GO:0048706 IGI embryonic skeletal system development
GO:0051216 IGI cartilage development
GO:0060017 IGI parathyroid gland development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000317201 HOXA3-002 protein_coding Homo_sapiens 0 383
ENST00000396352 HOXA3-001 protein_coding Homo_sapiens 0 294
ENST00000521401 HOXA3-006 processed_transcript Homo_sapiens 0 195
ENST00000522456 HOXA3-004 protein_coding Homo_sapiens 0 296
ENST00000522788 HOXA3-005 protein_coding Homo_sapiens 0 383
ENST00000612286 HOXA3-201 protein_coding Homo_sapiens 0 383

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