C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: serine/arginine-rich splicing factor 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000134943 Srsf4-004 ENSMUSG00000028911 10090 + 4:131884295-131897834 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastLiverMuscleOvaryPlacentaTestisENSMUST00000134943
Transcript ID Bladder Brain Breast Liver Muscle Ovary Placenta Testis
ENSMUST00000134943 8.836±0.09 40.024±0.00 3.608±0.00 12.699±0.00 3.509±0.42 54.919±0.00 19.697±12.23 22.589±11.89

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00099N CIL_00099N_0002 VISTA 4:131775516-132379227

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000373795 SRSF4-001 protein_coding Homo_sapiens 0 619
ENST00000466448 SRSF4-002 processed_transcript Homo_sapiens 0 619
ENST00000472353 SRSF4-006 processed_transcript Homo_sapiens 0 760
ENST00000477193 SRSF4-003 processed_transcript Homo_sapiens 0 231
ENST00000489898 SRSF4-004 processed_transcript Homo_sapiens 5e-37 158
ENST00000497015 SRSF4-005 processed_transcript Homo_sapiens 0 619
ENST00000605204 SRSF4-007 nonsense_mediated_decay Homo_sapiens 0 769
ENST00000622143 SRSF4-008 processed_transcript Homo_sapiens 0 435

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