C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: brachyury
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000136922 T-002 ENSMUSG00000062327 10090 + 17:8434925-8436992 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; LiverLungOvaryPlacentaENSMUST00000136922
Transcript ID Liver Lung Ovary Placenta
ENSMUST00000136922 0.024±0.00 0.092±0.03 0.091±0.01 0.023±0.01

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000981 IDA sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0001570 IMP vasculogenesis
GO:0001756 IMP somitogenesis
GO:0001839 IMP neural plate morphogenesis
GO:0001843 IMP neural tube closure
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006357 IDA regulation of transcription from RNA polymerase II promoter
GO:0006366 IDA transcription from RNA polymerase II promoter
GO:0007341 IMP penetration of zona pellucida
GO:0007498 IMP mesoderm development
GO:0007509 IMP mesoderm migration involved in gastrulation
GO:0008284 IMP positive regulation of cell proliferation
GO:0009653 IMP anatomical structure morphogenesis
GO:0009952 IMP anterior/posterior pattern specification
GO:0014028 IMP notochord formation
GO:0022414 IMP reproductive process
GO:0023019 IDA signal transduction involved in regulation of gene expression
GO:0030509 IDA BMP signaling pathway
GO:0030903 IMP notochord development
GO:0036342 IGI post-anal tail morphogenesis
GO:0043565 IDA sequence-specific DNA binding
GO:0045944 IGI positive regulation of transcription from RNA polymerase II promoter
GO:0048706 IMP embryonic skeletal system development
GO:0060070 IDA canonical Wnt signaling pathway
GO:0060349 IGI bone morphogenesis
GO:0060395 IDA SMAD protein signal transduction
GO:0061371 IMP determination of heart left/right asymmetry

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000296946 T-001 protein_coding Homo_sapiens 0 529
ENST00000366871 T-002 protein_coding Homo_sapiens 0 529
ENST00000366876 T-003 protein_coding Homo_sapiens 0 529
ENST00000461348 T-004 protein_coding Homo_sapiens 0 529

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