C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: chloride channel 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000137724 Clcn6-001 ENSMUSG00000029016 10090 - 4:148004259-148038821 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000137724
Transcript ID Adipose Adrenal Bladder Brain Breast Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000137724 4.208±2.62 2.596±1.37 3.408±0.30 16.904±5.71 6.537±0.70 2.976±0.84 9.284±2.46 1.807±0.86 6.972±1.73 1.422±0.00 5.047±3.17 6.637±4.76 4.826±0.48

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00087H CIL_00087H_0002 VISTA 4:147665245-148272946

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005247 IEA voltage-gated chloride channel activity
GO:0006821 IEA chloride transport
GO:0016021 IEA integral component of membrane
GO:0030554 IEA adenyl nucleotide binding
GO:0034220 IEA ion transmembrane transport
GO:0044070 IEA regulation of anion transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000312413 CLCN6-201 protein_coding Homo_sapiens 0 3057
ENST00000346436 CLCN6-001 protein_coding Homo_sapiens 0 3400
ENST00000376486 MTHFR-003 protein_coding Homo_sapiens 2e-40 171
ENST00000376490 CLCN6-002 processed_transcript Homo_sapiens 0 1157
ENST00000376491 CLCN6-004 processed_transcript Homo_sapiens 0 1068
ENST00000376492 CLCN6-003 processed_transcript Homo_sapiens 0 1205
ENST00000376496 CLCN6-005 protein_coding Homo_sapiens 0 3247
ENST00000376497 CLCN6-006 protein_coding Homo_sapiens 0 520
ENST00000494028 CLCN6-007 processed_transcript Homo_sapiens 0 446

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