C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Transcript Info |
||||||
| Description: | IMP4, U3 small nucleolar ribonucleoprotein, homolog (yeast) | |||||
|---|---|---|---|---|---|---|
| Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENSMUST00000137794  |
Imp4-004 |
ENSMUSG00000026127 |
10090 | + |
1:34439905-34443856  |
nonsense_mediated_decay |
Expression PatternsNo expression data. |
Conserved Regions | |||
|---|---|---|---|
| Region ID | Sub-Region | Region Type | Position |
| CIL_0001J7 | CIL_0001J7_0002 | CGP | 1:34436670-34449356 |
| CIL_0001J6 | CIL_0001J6_0002 | CGP | 1:34439851-34475733 |
Gene Ontology | ||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| GO:0003723 | ISA | RNA binding |
| GO:0005730 | ISA | nucleolus |
| GO:0006364 | TAS | rRNA processing |
| GO:0030519 | ISA | snoRNP binding |
Homologs | |||||
| ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
|
ENST00000259239
|
IMP4-001 | protein_coding | Homo_sapiens | 0 | 224 |
|
ENST00000409649
|
IMP4-010 | protein_coding | Homo_sapiens | 0 | 213 |
|
ENST00000409935
|
IMP4-002 | protein_coding | Homo_sapiens | 0 | 224 |
|
ENST00000428740
|
IMP4-012 | protein_coding | Homo_sapiens | 0 | 217 |
|
ENST00000456713
|
IMP4-013 | nonsense_mediated_decay | Homo_sapiens | 0 | 228 |
|
ENST00000460766
|
IMP4-004 | retained_intron | Homo_sapiens | 0 | 213 |
|
ENST00000462392
|
IMP4-003 | retained_intron | Homo_sapiens | 0 | 213 |
|
ENST00000464432
|
IMP4-005 | retained_intron | Homo_sapiens | 0 | 224 |
|
ENST00000470672
|
IMP4-007 | retained_intron | Homo_sapiens | 0 | 217 |
|
ENST00000473689
|
IMP4-006 | retained_intron | Homo_sapiens | 0 | 224 |
|
ENST00000477375
|
IMP4-008 | retained_intron | Homo_sapiens | 0 | 213 |
|
ENST00000490895
|
IMP4-009 | retained_intron | Homo_sapiens | 0 | 213 |
|
ENST00000495606
|
IMP4-011 | retained_intron | Homo_sapiens | 0 | 217 |
