C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: laminin gamma 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000138325 Lamc3-002 ENSMUSG00000026840 10090 + 2:31887291-31945246 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonLiverMuscleOvaryPlacentaENSMUST00000138325
Transcript ID Adipose Adrenal Brain Breast Colon Liver Muscle Ovary Placenta
ENSMUST00000138325 1.061±0.62 2.707±0.82 0.895±0.00 1.099±0.00 0.748±0.49 0.042±0.04 0.175±0.00 3.099±0.47 0.058±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008XQ CIL_0008XQ_0002 VISTA 2:31340644-31941311
CIL_0006II CIL_0006II_0002 CGP 2:31813290-31946539
CIL_00088E CIL_00088E_0002 VISTA 2:31827730-32428586
CIL_0002EI CIL_0002EI_0003 CGP 2:31887291-31973442

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000904 IGI cell morphogenesis involved in differentiation
GO:0005604 IDA basement membrane
GO:0007601 IGI visual perception
GO:0014002 IGI astrocyte development
GO:0060041 IGI retina development in camera-type eye

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000361069 LAMC3-004 protein_coding Homo_sapiens 0 2758
ENST00000480883 LAMC3-001 processed_transcript Homo_sapiens 0 1387

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