C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: actin-like 6B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000139395 Actl6b-001 ENSMUSG00000029712 10090 + 5:137553520-137569582 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000139395
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000139395 0.028±0.01 0.616±0.21 0.036±0.00 69.831±37.78 0.059±0.00 0.293±0.11 0.075±0.00 0.075±0.04 0.083±0.09 0.021±0.00 0.061±0.04 0.027±0.02 0.118±0.06

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005730 IEA nucleolus
GO:0006333 IC chromatin assembly or disassembly
GO:0006338 IEA chromatin remodeling
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007399 IMP nervous system development
GO:0016514 IDA SWI/SNF complex
GO:0071565 IDA nBAF complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000148532 actl6b-001 protein_coding Danio_rerio 0 789
ENSDART00000114640 actl6b-201 protein_coding Danio_rerio 0 564
ENST00000160382 ACTL6B-001 protein_coding Homo_sapiens 0 1954
ENST00000461605 ACTL6B-002 protein_coding Homo_sapiens 0 560
ENST00000485601 ACTL6B-004 retained_intron Homo_sapiens 0 1123
ENST00000487125 ACTL6B-006 retained_intron Homo_sapiens 0 590
ENST00000487225 ACTL6B-003 retained_intron Homo_sapiens 0 693
ENST00000489904 ACTL6B-005 retained_intron Homo_sapiens 0 374

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