C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: NDC1 transmembrane nucleoporin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000139560 Ndc1-001 ENSMUSG00000028614 10090 + 4:107367784-107416346 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000139560
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000139560 6.128±2.56 2.316±0.56 2.568±0.06 5.545±3.73 4.317±1.69 2.987±0.97 3.703±0.38 3.694±1.08 4.758±3.48 3.009±0.29 1.531±0.35 6.697±4.02 11.019±3.64 4.770±1.09

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00083F CIL_00083F_0002 VISTA 4:107302048-107904613

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005643 IDA nuclear pore
GO:0005737 IDA cytoplasm
GO:0007129 IMP synapsis
GO:0007283 IMP spermatogenesis
GO:0015031 IEA protein transport
GO:0016020 IEA membrane
GO:0017056 IEA structural constituent of nuclear pore
GO:0031081 IEA nuclear pore distribution
GO:0051028 IEA mRNA transport
GO:0051292 IEA nuclear pore complex assembly

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000371429 NDC1-001 protein_coding Homo_sapiens 0 3020

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