C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: AT rich interactive domain 1A (SWI-like)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000139709 Arid1a-004 ENSMUSG00000007880 10090 - 4:133720779-133723879 protein_coding

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007T4 CIL_0007T4_0002 VISTA 4:133429051-134030305

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0000790 IDA nuclear chromatin
GO:0001843 IMP neural tube closure
GO:0003205 IMP cardiac chamber development
GO:0003408 IMP optic cup formation involved in camera-type eye development
GO:0005515 IPI protein binding
GO:0006325 IPI chromatin organization
GO:0016514 IDA SWI/SNF complex
GO:0030900 IMP forebrain development
GO:0031491 IDA nucleosome binding
GO:0043044 IDA ATP-dependent chromatin remodeling
GO:0060674 IMP placenta blood vessel development
GO:0090544 IDA BAF-type complex
GO:1901998 IMP toxin transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000324856 ARID1A-001 protein_coding Homo_sapiens 0 603
ENST00000374152 ARID1A-003 protein_coding Homo_sapiens 0 645
ENST00000457599 ARID1A-002 protein_coding Homo_sapiens 0 603
ENST00000524572 ARID1A-007 protein_coding Homo_sapiens 0 521
ENST00000615191 ARID1A-201 protein_coding Homo_sapiens 0 645

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