C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: AT rich interactive domain 1A (SWI-like)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000007880 Arid1a 10090 - 4:133679008-133756769 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000008024 Arid1a-002 133679941-133756769 protein_coding
  ENSMUST00000105897 Arid1a-201 133679008-133753611 protein_coding
  ENSMUST00000138473 Arid1a-003 133689487-133753982 retained_intron
  ENSMUST00000139709 Arid1a-004 133720779-133723879 protein_coding
  ENSMUST00000145664 Arid1a-001 133679008-133753611 protein_coding
  ENSMUST00000168582 Arid1a-006 133719360-133720776 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000008024ENSMUST00000105897ENSMUST00000145664
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000008024 1.567±0.00 12.799±3.40 N/A 19.279±0.00 28.993±4.16 19.376±0.88 N/A N/A 3.796±1.48 17.433±9.62 0.806±0.00 23.103±2.65 4.823±0.00 4.346±3.31
ENSMUST00000105897 N/A N/A N/A N/A N/A N/A N/A N/A 1.354±0.00 N/A 0.795±0.00 N/A N/A N/A
ENSMUST00000145664 6.327±2.14 8.585±2.15 3.348±0.01 9.201±4.64 10.167±5.52 5.114±1.51 1.474±0.22 2.869±0.43 2.901±1.10 8.957±2.33 2.103±1.27 7.036±2.49 9.406±5.99 3.591±1.07

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007T4 CIL_0007T4_0002 VISTA 4:133429051-134030305

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0000790 IDA nuclear chromatin
GO:0001843 IMP neural tube closure
GO:0003205 IMP cardiac chamber development
GO:0003408 IMP optic cup formation involved in camera-type eye development
GO:0003677 IEA DNA binding
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0006325 IPI chromatin organization
GO:0006337 IEA nucleosome disassembly
GO:0006351 IEA transcription, DNA-templated
GO:0016514 IDA:ISS SWI/SNF complex
GO:0016922 IEA ligand-dependent nuclear receptor binding
GO:0030520 ISS intracellular estrogen receptor signaling pathway
GO:0030521 ISS androgen receptor signaling pathway
GO:0030900 IMP forebrain development
GO:0031491 IDA nucleosome binding
GO:0042921 IEA glucocorticoid receptor signaling pathway
GO:0043044 IDA ATP-dependent chromatin remodeling
GO:0045893 ISS positive regulation of transcription, DNA-templated
GO:0060674 IMP placenta blood vessel development
GO:0071564 IDA npBAF complex
GO:0071565 IDA nBAF complex
GO:0090544 IDA BAF-type complex
GO:1901998 IMP toxin transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000060073 arid1ab AT rich interactive domain 1Ab (SWI-like) protein_coding Danio_rerio
ENSDARG00000079879 arid1aa AT rich interactive domain 1Aa (SWI-like) protein_coding Danio_rerio
ENSG00000117713 ARID1A AT rich interactive domain 1A (SWI-like) protein_coding Homo_sapiens

Loading