C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: REV3-like, catalytic subunit of DNA polymerase zeta RAD54 like (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000139803 Rev3l-004 ENSMUSG00000019841 10090 + 10:39825131-39875208 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000139803
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000139803 7.317±6.07 8.231±1.91 12.939±8.64 2.955±0.85 1.313±0.44 0.670±0.20 1.073±0.38 1.766±1.13 1.599±0.45 3.657±1.07 3.227±1.45 2.021±0.74 4.411±0.23

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000954 CIL_000954_0002 VISTA 10:39357714-39964005

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003677 IEA DNA binding
GO:0003887 IBA DNA-directed DNA polymerase activity
GO:0005634 IBA nucleus
GO:0005694 IBA chromosome
GO:0005730 IDA nucleolus
GO:0006260 IEA DNA replication
GO:0006281 IMP DNA repair
GO:0016035 IBA zeta DNA polymerase complex
GO:0019985 IBA translesion synthesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000358835 REV3L-201 protein_coding Homo_sapiens 0 2889
ENST00000368802 REV3L-009 protein_coding Homo_sapiens 0 2913
ENST00000368805 REV3L-010 protein_coding Homo_sapiens 0 2913
ENST00000413831 REV3L-003 nonsense_mediated_decay Homo_sapiens 0 424
ENST00000422377 REV3L-001 nonsense_mediated_decay Homo_sapiens 0 2913
ENST00000434009 REV3L-008 nonsense_mediated_decay Homo_sapiens 0 2913
ENST00000435970 REV3L-202 protein_coding Homo_sapiens 0 2889
ENST00000462119 REV3L-006 processed_transcript Homo_sapiens 0 1555
ENST00000619481 REV3L-203 protein_coding Homo_sapiens 0 915

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