C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: REV3-like, polymerase (DNA directed), zeta, catalytic subunit
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000368805 REV3L-010 ENSG00000009413 9606 - 6:111299031-111483229 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartLiverMuscleOvaryPlacentaTestisENST00000368805
Transcript ID Adrenal Brain Breast Colon Heart Liver Muscle Ovary Placenta Testis
ENST00000368805 1.243±0.00 1.336±0.00 1.520±0.00 2.331±0.00 0.289±0.00 0.393±0.00 1.549±0.60 1.568±0.00 1.034±0.40 1.730±0.30

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000954 CIL_000954_0001 VISTA 6:111250485-111855465
CIL_0001OQ CIL_0001OQ_0002 CGP 6:111259348-111483715
CIL_0001OP CIL_0001OP_0002 CGP 6:111299028-111606278

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0003887 IBA:IEA DNA-directed DNA polymerase activity
GO:0005515 IPI protein binding
GO:0005634 IBA nucleus
GO:0005694 IBA chromosome
GO:0006261 TAS DNA-dependent DNA replication
GO:0016035 IDA zeta DNA polymerase complex
GO:0019985 IBA translesion synthesis
GO:0046872 IEA metal ion binding
GO:0051539 IEA 4 iron, 4 sulfur cluster binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000019986 Rev3l-001 protein_coding Mus_musculus 0 11830
ENSMUST00000164763 Rev3l-201 protein_coding Mus_musculus 0 11810
ENSMUST00000131186 Rev3l-002 nonsense_mediated_decay Mus_musculus 0 11530
ENSMUST00000139803 Rev3l-004 nonsense_mediated_decay Mus_musculus 0 2913
ENSMUST00000145333 Rev3l-003 retained_intron Mus_musculus 0 1140
ENSMUST00000127726 Rev3l-006 retained_intron Mus_musculus 0 614

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