C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: phosphoribosyl pyrophosphate amidotransferase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000140076 Ppat-001 ENSMUSG00000029246 10090 - 5:76913276-76951578 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000140076
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000140076 4.819±0.10 4.428±0.25 3.740±0.68 3.370±0.49 3.130±0.70 3.567±0.15 8.493±1.02 13.174±3.73 3.894±0.37 5.891±0.72 7.568±1.44 7.487±3.64 2.398±0.26

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00084Q CIL_00084Q_0002 VISTA 5:76362343-76966797
CIL_0008G9 CIL_0008G9_0002 VISTA 5:76829880-77430993
CIL_00025Q CIL_00025Q_0002 CGP 5:76873659-76951578
CIL_0001WN CIL_0001WN_0002 CGP 5:76913249-76967509

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000082 IEA G1/S transition of mitotic cell cycle
GO:0001822 IEA kidney development
GO:0004044 IEA amidophosphoribosyltransferase activity
GO:0006189 IEA 'de novo' IMP biosynthetic process
GO:0006543 IEA glutamine catabolic process
GO:0007595 IEA lactation
GO:0009113 IEA purine nucleobase biosynthetic process
GO:0009116 IEA nucleoside metabolic process
GO:0009168 IEA purine ribonucleoside monophosphate biosynthetic process
GO:0019693 IEA ribose phosphate metabolic process
GO:0031100 IEA organ regeneration
GO:0032869 IEA cellular response to insulin stimulus
GO:0035690 IEA cellular response to drug
GO:0042493 IEA response to drug
GO:0046872 IEA metal ion binding
GO:0051289 IEA protein homotetramerization
GO:0051536 IEA iron-sulfur cluster binding
GO:0060135 IEA maternal process involved in female pregnancy

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000264220 PPAT-001 protein_coding Homo_sapiens 0 1729
ENST00000425339 PPAT-002 retained_intron Homo_sapiens 0 636
ENST00000496669 PPATP1-001 processed_pseudogene Homo_sapiens 0 1437
ENST00000507648 PPAT-003 processed_transcript Homo_sapiens 0 628
ENST00000507724 PPAT-004 nonsense_mediated_decay Homo_sapiens 0 303
ENST00000510643 PPAT-005 nonsense_mediated_decay Homo_sapiens 0 451

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