C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PQ loop repeat containing 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000140594 Pqlc1-005 ENSMUSG00000034006 10090 + 18:80256307-80292714 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000140594
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000140594 2.712±0.64 3.379±0.90 2.210±0.23 2.406±0.24 3.170±0.15 4.225±0.04 5.398±0.33 7.723±2.91 6.283±1.43 0.904±0.00 5.677±0.98 1.016±0.00 4.076±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007Y9 CIL_0007Y9_0002 VISTA 18:80030119-80632361
CIL_0001P3 CIL_0001P3_0002 CGP 18:80253292-80364254

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000351365 PQLC1-003 nonsense_mediated_decay Homo_sapiens 0 688
ENST00000357575 PQLC1-009 protein_coding Homo_sapiens 0 514
ENST00000397778 PQLC1-001 protein_coding Homo_sapiens 0 869
ENST00000466449 PQLC1-002 retained_intron Homo_sapiens 0 512
ENST00000469369 PQLC1-007 processed_transcript Homo_sapiens 0 446
ENST00000494607 PQLC1-005 processed_transcript Homo_sapiens 0 424
ENST00000589000 PQLC1-013 processed_transcript Homo_sapiens 0 353
ENST00000591964 PQLC1-011 nonsense_mediated_decay Homo_sapiens 0 241

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